miRNA display CGI

Results 21 - 40 of 1036 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6349	3'	-59	NC_001847.1	+	2471	0.72	0.397115
	Target:  5'- aGCGGGCG-GCGGCgCCcccgccgccgugugAAGACGucgcgaGGGCCg -3' miRNA:   3'- -UGCCCGCgCGCCG-GG--------------UUUUGU------UCCGG- -5'
6349	3'	-59	NC_001847.1	+	2575	0.71	0.47052
	Target:  5'- cGCGGGCgccuGCGCGGCCgc---CGcGGCCg -3' miRNA:   3'- -UGCCCG----CGCGCCGGguuuuGUuCCGG- -5'
6349	3'	-59	NC_001847.1	+	2771	0.7	0.547259
	Target:  5'- gGCGccGGCGCccccgccgGCGGCCUc---CAGGGCCg -3' miRNA:   3'- -UGC--CCGCG--------CGCCGGGuuuuGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	2841	0.72	0.391267
	Target:  5'- gGCGGGCugaacagcgcGCGCGccagcGCCCAGgccGACGcgcGGGCCg -3' miRNA:   3'- -UGCCCG----------CGCGC-----CGGGUU---UUGU---UCCGG- -5'
6349	3'	-59	NC_001847.1	+	2871	0.69	0.5972
	Target:  5'- cGCGGGCGuCGUcgucgGGCCgGGuGCGucgccguucGGGCCg -3' miRNA:   3'- -UGCCCGC-GCG-----CCGGgUUuUGU---------UCCGG- -5'
6349	3'	-59	NC_001847.1	+	2971	0.67	0.667949
	Target:  5'- --cGGCGCGCaGCgCCGc--CGGGGCCg -3' miRNA:   3'- ugcCCGCGCGcCG-GGUuuuGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	3024	0.74	0.327803
	Target:  5'- cGCGGGcCGCgccgagcagcucgGCGGCCCGGAGCAcgcgcuccGGGUg -3' miRNA:   3'- -UGCCC-GCG-------------CGCCGGGUUUUGU--------UCCGg -5'
6349	3'	-59	NC_001847.1	+	3082	0.72	0.425428
	Target:  5'- cGCGuccGGCGCGCaGGCCgCGGccGGCA-GGCCg -3' miRNA:   3'- -UGC---CCGCGCG-CCGG-GUU--UUGUuCCGG- -5'
6349	3'	-59	NC_001847.1	+	3114	0.68	0.637639
	Target:  5'- cGCGGcccGC-CGCGGCCgAGAGCAccgGGaGCCc -3' miRNA:   3'- -UGCC---CGcGCGCCGGgUUUUGU---UC-CGG- -5'
6349	3'	-59	NC_001847.1	+	3270	0.69	0.557158
	Target:  5'- cCGGcGcCGCGCGGCCgGcGAGCAcGGCg -3' miRNA:   3'- uGCC-C-GCGCGCCGGgU-UUUGUuCCGg -5'
6349	3'	-59	NC_001847.1	+	3318	0.71	0.469594
	Target:  5'- cGCGGGCgccgcugccgccgGCGcCGGCCUccGGguAGGCCa -3' miRNA:   3'- -UGCCCG-------------CGC-GCCGGGuuUUguUCCGG- -5'
6349	3'	-59	NC_001847.1	+	3427	0.69	0.577102
	Target:  5'- -gGGGCgccagGCGCaGCCCAGGGgguCGAGGCg -3' miRNA:   3'- ugCCCG-----CGCGcCGGGUUUU---GUUCCGg -5'
6349	3'	-59	NC_001847.1	+	3524	0.7	0.547259
	Target:  5'- uACGGGC-CGUGGCCgAcuAC--GGCCg -3' miRNA:   3'- -UGCCCGcGCGCCGGgUuuUGuuCCGG- -5'
6349	3'	-59	NC_001847.1	+	3569	0.66	0.741133
	Target:  5'- aGCaGGCGCGCcagcugcagguccgGGCCCGcgagcuucgcgcucuGCAgccAGGCCa -3' miRNA:   3'- -UGcCCGCGCG--------------CCGGGUuu-------------UGU---UCCGG- -5'
6349	3'	-59	NC_001847.1	+	3718	0.7	0.515987
	Target:  5'- cGCGGccgccgcguaGCGCGCGGCCgccucgcggaucuCGGGGCAgucccagAGGCCc -3' miRNA:   3'- -UGCC----------CGCGCGCCGG-------------GUUUUGU-------UCCGG- -5'
6349	3'	-59	NC_001847.1	+	3812	0.72	0.391267
	Target:  5'- cCGGGCgGCgGCGGCgCGcuGCcGGGCCa -3' miRNA:   3'- uGCCCG-CG-CGCCGgGUuuUGuUCCGG- -5'
6349	3'	-59	NC_001847.1	+	3815	0.67	0.688027
	Target:  5'- cACGGG-GCGuCGGCCgcGAGCGuGGCg -3' miRNA:   3'- -UGCCCgCGC-GCCGGguUUUGUuCCGg -5'
6349	3'	-59	NC_001847.1	+	3891	0.73	0.358946
	Target:  5'- cGCGcGGCGcCGCGGCguagCCAGcGCGGGcGCCg -3' miRNA:   3'- -UGC-CCGC-GCGCCG----GGUUuUGUUC-CGG- -5'
6349	3'	-59	NC_001847.1	+	3942	0.72	0.416721
	Target:  5'- aGCGGGCggcgaGCGCGaCCCAcAGCGccagcgcgagguGGGCCg -3' miRNA:   3'- -UGCCCG-----CGCGCcGGGUuUUGU------------UCCGG- -5'
6349	3'	-59	NC_001847.1	+	3991	0.89	0.03204
	Target:  5'- cCGGGCGCGCGGCCCcgcGGGGCGccGGGCCc -3' miRNA:   3'- uGCCCGCGCGCCGGG---UUUUGU--UCCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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