Results 21 - 40 of 1036 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6349 | 3' | -59 | NC_001847.1 | + | 111292 | 0.78 | 0.172607 |
Target: 5'- -gGGGCgGCGCucGGCCgGGGGCGGGGCCc -3' miRNA: 3'- ugCCCG-CGCG--CCGGgUUUUGUUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 101142 | 0.79 | 0.16417 |
Target: 5'- gAUGGGCGCGgGGgCUggGGcCGGGGCCg -3' miRNA: 3'- -UGCCCGCGCgCCgGGuuUU-GUUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 41176 | 0.8 | 0.134023 |
Target: 5'- cGCGGGCGCGCGuguuaagagggcGCCCAGAA-AAGGCg -3' miRNA: 3'- -UGCCCGCGCGC------------CGGGUUUUgUUCCGg -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 14578 | 0.81 | 0.114849 |
Target: 5'- gGCGGGCGCGCGGCUCucuAAgGAcGCCg -3' miRNA: 3'- -UGCCCGCGCGCCGGGuu-UUgUUcCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 132145 | 0.77 | 0.215509 |
Target: 5'- cGCGGuggagcGCGCGCGGCuCCAGcGCGcGGCCc -3' miRNA: 3'- -UGCC------CGCGCGCCG-GGUUuUGUuCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 128813 | 0.78 | 0.176969 |
Target: 5'- gGCGGGCGCGCaGGCgcgcaCAAAA-AGGGCCa -3' miRNA: 3'- -UGCCCGCGCG-CCGg----GUUUUgUUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 30432 | 0.79 | 0.160092 |
Target: 5'- gGCGGGCGCGgaGGCgCCGGGGCugcacgagguGGGCCg -3' miRNA: 3'- -UGCCCGCGCg-CCG-GGUUUUGu---------UCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 129329 | 0.83 | 0.081772 |
Target: 5'- cCGGGCGCGgGGCCgGGGGCGuucGGCCa -3' miRNA: 3'- uGCCCGCGCgCCGGgUUUUGUu--CCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 103957 | 0.78 | 0.176969 |
Target: 5'- gGCGccucGGCGCGCGGCuCCGGcAGCGcGGCCg -3' miRNA: 3'- -UGC----CCGCGCGCCG-GGUU-UUGUuCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 67827 | 0.83 | 0.081772 |
Target: 5'- cGCGGcgucCGCGCGGCCCAAAA-AGGGCCg -3' miRNA: 3'- -UGCCc---GCGCGCCGGGUUUUgUUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 7738 | 0.79 | 0.163758 |
Target: 5'- cGCGGGCGCggagGCGGCggCCAGGGCAAgcccgacGGCCg -3' miRNA: 3'- -UGCCCGCG----CGCCG--GGUUUUGUU-------CCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 19191 | 0.78 | 0.176529 |
Target: 5'- gGCGGGgGCggggucuGUGGCCCAGAcgGCGAGuGCCg -3' miRNA: 3'- -UGCCCgCG-------CGCCGGGUUU--UGUUC-CGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 115712 | 0.8 | 0.14468 |
Target: 5'- aGCGGGCGCGCGGCCUuuGGCGcucCCg -3' miRNA: 3'- -UGCCCGCGCGCCGGGuuUUGUuccGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 45510 | 0.8 | 0.134023 |
Target: 5'- gGCGGGCGCcgccgccggGCGGCgC-GGACGGGGCCg -3' miRNA: 3'- -UGCCCGCG---------CGCCGgGuUUUGUUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 125236 | 0.81 | 0.124093 |
Target: 5'- cGCGGGgGCGgGGCCCGAGACcacgcGGUCg -3' miRNA: 3'- -UGCCCgCGCgCCGGGUUUUGuu---CCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 41820 | 0.81 | 0.117857 |
Target: 5'- cGCGGGCGgGCGGCgCGGGuccCAGGGCUg -3' miRNA: 3'- -UGCCCGCgCGCCGgGUUUu--GUUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 96922 | 0.76 | 0.231724 |
Target: 5'- cGCGuagaGGCGCGCGGCCCGGgccuccgcgggcGGCAGGcGCUc -3' miRNA: 3'- -UGC----CCGCGCGCCGGGUU------------UUGUUC-CGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 132267 | 0.77 | 0.215509 |
Target: 5'- cGCGcGGCGCgGCGGCCCGc-GCGucGGCCu -3' miRNA: 3'- -UGC-CCGCG-CGCCGGGUuuUGUu-CCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 33979 | 0.77 | 0.19541 |
Target: 5'- cCGGGCGCGCuGGCCgG--GCuGGGCCc -3' miRNA: 3'- uGCCCGCGCG-CCGGgUuuUGuUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 26761 | 0.78 | 0.185988 |
Target: 5'- cGCGGGUGCGCGGCCUGGucaguGCGcGcGCCc -3' miRNA: 3'- -UGCCCGCGCGCCGGGUUu----UGUuC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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