miRNA display CGI


Results 21 - 40 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 106804 0.89 0.03204
Target:  5'- cCGGGCGCGCGGCCCcgcGGGGCGccGGGCCc -3'
miRNA:   3'- uGCCCGCGCGCCGGG---UUUUGU--UCCGG- -5'
6349 3' -59 NC_001847.1 + 125385 0.78 0.190648
Target:  5'- aGCGGuaaGCGgGCGcCCCGGGGCAGGGCCc -3'
miRNA:   3'- -UGCC---CGCgCGCcGGGUUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 33662 0.78 0.190648
Target:  5'- cGCGuGGC-CGCGGCCCGc-GCGGGGCUa -3'
miRNA:   3'- -UGC-CCGcGCGCCGGGUuuUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 124934 0.79 0.16417
Target:  5'- aGCGGGCGCGCccugGGCCCGGcGGCGGcGGCg -3'
miRNA:   3'- -UGCCCGCGCG----CCGGGUU-UUGUU-CCGg -5'
6349 3' -59 NC_001847.1 + 34365 0.8 0.137493
Target:  5'- gGCGGGCGCugauGCGGCCgAAacAACGGcGGCCg -3'
miRNA:   3'- -UGCCCGCG----CGCCGGgUU--UUGUU-CCGG- -5'
6349 3' -59 NC_001847.1 + 104344 0.77 0.220269
Target:  5'- uCGGcGCGCGCGaaggcGCCCGGGccgaagacgcgccGCGAGGCCa -3'
miRNA:   3'- uGCC-CGCGCGC-----CGGGUUU-------------UGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 82227 0.77 0.202251
Target:  5'- cGCGGGCGCcccgagccgcugcccGCGGaCCUAGGACu-GGCCa -3'
miRNA:   3'- -UGCCCGCG---------------CGCC-GGGUUUUGuuCCGG- -5'
6349 3' -59 NC_001847.1 + 30750 0.81 0.124093
Target:  5'- gGCGGGCGUagaccGCGGCCCGcuGCAGcGCCg -3'
miRNA:   3'- -UGCCCGCG-----CGCCGGGUuuUGUUcCGG- -5'
6349 3' -59 NC_001847.1 + 68215 0.78 0.176969
Target:  5'- -gGGGCGCaCGGgCCGcgGCGGGGCCg -3'
miRNA:   3'- ugCCCGCGcGCCgGGUuuUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 111292 0.78 0.172607
Target:  5'- -gGGGCgGCGCucGGCCgGGGGCGGGGCCc -3'
miRNA:   3'- ugCCCG-CGCG--CCGGgUUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 98019 0.81 0.120938
Target:  5'- cUGGGCGUGCGcGcCCCAGAGCAugaacaccagcGGGCCg -3'
miRNA:   3'- uGCCCGCGCGC-C-GGGUUUUGU-----------UCCGG- -5'
6349 3' -59 NC_001847.1 + 33628 0.81 0.120938
Target:  5'- gACGGGCGCgGCGGCUgAccGCGAGGCg -3'
miRNA:   3'- -UGCCCGCG-CGCCGGgUuuUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 18734 0.76 0.237353
Target:  5'- ---aGCGCGCGGCCCGGGGCccaGAGcGCCg -3'
miRNA:   3'- ugccCGCGCGCCGGGUUUUG---UUC-CGG- -5'
6349 3' -59 NC_001847.1 + 35327 0.76 0.226208
Target:  5'- aGCGGGCGUGC-GCCUGgagcugccGAGCGAGGCUc -3'
miRNA:   3'- -UGCCCGCGCGcCGGGU--------UUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 26761 0.78 0.185988
Target:  5'- cGCGGGUGCGCGGCCUGGucaguGCGcGcGCCc -3'
miRNA:   3'- -UGCCCGCGCGCCGGGUUu----UGUuC-CGG- -5'
6349 3' -59 NC_001847.1 + 103689 0.79 0.160092
Target:  5'- cGCGcGGCG-GCGGCCCGcgcCGGGGCCg -3'
miRNA:   3'- -UGC-CCGCgCGCCGGGUuuuGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 4813 0.8 0.14468
Target:  5'- gACGaGGCGCGCGauGCCCuuGAGCGugGGGCCg -3'
miRNA:   3'- -UGC-CCGCGCGC--CGGGu-UUUGU--UCCGG- -5'
6349 3' -59 NC_001847.1 + 41820 0.81 0.117857
Target:  5'- cGCGGGCGgGCGGCgCGGGuccCAGGGCUg -3'
miRNA:   3'- -UGCCCGCgCGCCGgGUUUu--GUUCCGG- -5'
6349 3' -59 NC_001847.1 + 52519 0.78 0.168341
Target:  5'- cGCGGcCGCGCGGCCCGGGGgAuGGUCg -3'
miRNA:   3'- -UGCCcGCGCGCCGGGUUUUgUuCCGG- -5'
6349 3' -59 NC_001847.1 + 43578 0.78 0.176969
Target:  5'- cGCGGGCGaCGCGcGCCCcagcguGGCGcugGGGCCg -3'
miRNA:   3'- -UGCCCGC-GCGC-CGGGuu----UUGU---UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.