miRNA display CGI


Results 1 - 20 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 106804 0.89 0.03204
Target:  5'- cCGGGCGCGCGGCCCcgcGGGGCGccGGGCCc -3'
miRNA:   3'- uGCCCGCGCGCCGGG---UUUUGU--UCCGG- -5'
6349 3' -59 NC_001847.1 + 30432 0.79 0.160092
Target:  5'- gGCGGGCGCGgaGGCgCCGGGGCugcacgagguGGGCCg -3'
miRNA:   3'- -UGCCCGCGCg-CCG-GGUUUUGu---------UCCGG- -5'
6349 3' -59 NC_001847.1 + 101142 0.79 0.16417
Target:  5'- gAUGGGCGCGgGGgCUggGGcCGGGGCCg -3'
miRNA:   3'- -UGCCCGCGCgCCgGGuuUU-GUUCCGG- -5'
6349 3' -59 NC_001847.1 + 79076 0.65 0.780633
Target:  5'- cCGGGCGCGUGcgacgugugcccguGCgCCGcgccgugccugugGAAgAAGGCCc -3'
miRNA:   3'- uGCCCGCGCGC--------------CG-GGU-------------UUUgUUCCGG- -5'
6349 3' -59 NC_001847.1 + 41820 0.81 0.117857
Target:  5'- cGCGGGCGgGCGGCgCGGGuccCAGGGCUg -3'
miRNA:   3'- -UGCCCGCgCGCCGgGUUUu--GUUCCGG- -5'
6349 3' -59 NC_001847.1 + 33628 0.81 0.120938
Target:  5'- gACGGGCGCgGCGGCUgAccGCGAGGCg -3'
miRNA:   3'- -UGCCCGCG-CGCCGGgUuuUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 125236 0.81 0.124093
Target:  5'- cGCGGGgGCGgGGCCCGAGACcacgcGGUCg -3'
miRNA:   3'- -UGCCCgCGCgCCGGGUUUUGuu---CCGG- -5'
6349 3' -59 NC_001847.1 + 30750 0.81 0.124093
Target:  5'- gGCGGGCGUagaccGCGGCCCGcuGCAGcGCCg -3'
miRNA:   3'- -UGCCCGCG-----CGCCGGGUuuUGUUcCGG- -5'
6349 3' -59 NC_001847.1 + 45510 0.8 0.134023
Target:  5'- gGCGGGCGCcgccgccggGCGGCgC-GGACGGGGCCg -3'
miRNA:   3'- -UGCCCGCG---------CGCCGgGuUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 104241 0.79 0.160092
Target:  5'- cGCGGuGCGCG-GGCCCAGGcGCGuGGCCa -3'
miRNA:   3'- -UGCC-CGCGCgCCGGGUUU-UGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 4813 0.8 0.14468
Target:  5'- gACGaGGCGCGCGauGCCCuuGAGCGugGGGCCg -3'
miRNA:   3'- -UGC-CCGCGCGC--CGGGu-UUUGU--UCCGG- -5'
6349 3' -59 NC_001847.1 + 41176 0.8 0.134023
Target:  5'- cGCGGGCGCGCGuguuaagagggcGCCCAGAA-AAGGCg -3'
miRNA:   3'- -UGCCCGCGCGC------------CGGGUUUUgUUCCGg -5'
6349 3' -59 NC_001847.1 + 67827 0.83 0.081772
Target:  5'- cGCGGcgucCGCGCGGCCCAAAA-AGGGCCg -3'
miRNA:   3'- -UGCCc---GCGCGCCGGGUUUUgUUCCGG- -5'
6349 3' -59 NC_001847.1 + 115712 0.8 0.14468
Target:  5'- aGCGGGCGCGCGGCCUuuGGCGcucCCg -3'
miRNA:   3'- -UGCCCGCGCGCCGGGuuUUGUuccGG- -5'
6349 3' -59 NC_001847.1 + 129329 0.83 0.081772
Target:  5'- cCGGGCGCGgGGCCgGGGGCGuucGGCCa -3'
miRNA:   3'- uGCCCGCGCgCCGGgUUUUGUu--CCGG- -5'
6349 3' -59 NC_001847.1 + 131135 0.8 0.134023
Target:  5'- gGCGGGCGcCG-GGCCCGGcgccccGCGGGGCCg -3'
miRNA:   3'- -UGCCCGC-GCgCCGGGUUu-----UGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 103689 0.79 0.160092
Target:  5'- cGCGcGGCG-GCGGCCCGcgcCGGGGCCg -3'
miRNA:   3'- -UGC-CCGCgCGCCGGGUuuuGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 7738 0.79 0.163758
Target:  5'- cGCGGGCGCggagGCGGCggCCAGGGCAAgcccgacGGCCg -3'
miRNA:   3'- -UGCCCGCG----CGCCG--GGUUUUGUU-------CCGG- -5'
6349 3' -59 NC_001847.1 + 14578 0.81 0.114849
Target:  5'- gGCGGGCGCGCGGCUCucuAAgGAcGCCg -3'
miRNA:   3'- -UGCCCGCGCGCCGGGuu-UUgUUcCGG- -5'
6349 3' -59 NC_001847.1 + 98019 0.81 0.120938
Target:  5'- cUGGGCGUGCGcGcCCCAGAGCAugaacaccagcGGGCCg -3'
miRNA:   3'- uGCCCGCGCGC-C-GGGUUUUGU-----------UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.