Results 1 - 20 of 1036 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6349 | 3' | -59 | NC_001847.1 | + | 106804 | 0.89 | 0.03204 |
Target: 5'- cCGGGCGCGCGGCCCcgcGGGGCGccGGGCCc -3' miRNA: 3'- uGCCCGCGCGCCGGG---UUUUGU--UCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 30432 | 0.79 | 0.160092 |
Target: 5'- gGCGGGCGCGgaGGCgCCGGGGCugcacgagguGGGCCg -3' miRNA: 3'- -UGCCCGCGCg-CCG-GGUUUUGu---------UCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 101142 | 0.79 | 0.16417 |
Target: 5'- gAUGGGCGCGgGGgCUggGGcCGGGGCCg -3' miRNA: 3'- -UGCCCGCGCgCCgGGuuUU-GUUCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 79076 | 0.65 | 0.780633 |
Target: 5'- cCGGGCGCGUGcgacgugugcccguGCgCCGcgccgugccugugGAAgAAGGCCc -3' miRNA: 3'- uGCCCGCGCGC--------------CG-GGU-------------UUUgUUCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 41820 | 0.81 | 0.117857 |
Target: 5'- cGCGGGCGgGCGGCgCGGGuccCAGGGCUg -3' miRNA: 3'- -UGCCCGCgCGCCGgGUUUu--GUUCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 33628 | 0.81 | 0.120938 |
Target: 5'- gACGGGCGCgGCGGCUgAccGCGAGGCg -3' miRNA: 3'- -UGCCCGCG-CGCCGGgUuuUGUUCCGg -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 125236 | 0.81 | 0.124093 |
Target: 5'- cGCGGGgGCGgGGCCCGAGACcacgcGGUCg -3' miRNA: 3'- -UGCCCgCGCgCCGGGUUUUGuu---CCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 30750 | 0.81 | 0.124093 |
Target: 5'- gGCGGGCGUagaccGCGGCCCGcuGCAGcGCCg -3' miRNA: 3'- -UGCCCGCG-----CGCCGGGUuuUGUUcCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 45510 | 0.8 | 0.134023 |
Target: 5'- gGCGGGCGCcgccgccggGCGGCgC-GGACGGGGCCg -3' miRNA: 3'- -UGCCCGCG---------CGCCGgGuUUUGUUCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 104241 | 0.79 | 0.160092 |
Target: 5'- cGCGGuGCGCG-GGCCCAGGcGCGuGGCCa -3' miRNA: 3'- -UGCC-CGCGCgCCGGGUUU-UGUuCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 4813 | 0.8 | 0.14468 |
Target: 5'- gACGaGGCGCGCGauGCCCuuGAGCGugGGGCCg -3' miRNA: 3'- -UGC-CCGCGCGC--CGGGu-UUUGU--UCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 41176 | 0.8 | 0.134023 |
Target: 5'- cGCGGGCGCGCGuguuaagagggcGCCCAGAA-AAGGCg -3' miRNA: 3'- -UGCCCGCGCGC------------CGGGUUUUgUUCCGg -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 67827 | 0.83 | 0.081772 |
Target: 5'- cGCGGcgucCGCGCGGCCCAAAA-AGGGCCg -3' miRNA: 3'- -UGCCc---GCGCGCCGGGUUUUgUUCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 115712 | 0.8 | 0.14468 |
Target: 5'- aGCGGGCGCGCGGCCUuuGGCGcucCCg -3' miRNA: 3'- -UGCCCGCGCGCCGGGuuUUGUuccGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 129329 | 0.83 | 0.081772 |
Target: 5'- cCGGGCGCGgGGCCgGGGGCGuucGGCCa -3' miRNA: 3'- uGCCCGCGCgCCGGgUUUUGUu--CCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 131135 | 0.8 | 0.134023 |
Target: 5'- gGCGGGCGcCG-GGCCCGGcgccccGCGGGGCCg -3' miRNA: 3'- -UGCCCGC-GCgCCGGGUUu-----UGUUCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 103689 | 0.79 | 0.160092 |
Target: 5'- cGCGcGGCG-GCGGCCCGcgcCGGGGCCg -3' miRNA: 3'- -UGC-CCGCgCGCCGGGUuuuGUUCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 7738 | 0.79 | 0.163758 |
Target: 5'- cGCGGGCGCggagGCGGCggCCAGGGCAAgcccgacGGCCg -3' miRNA: 3'- -UGCCCGCG----CGCCG--GGUUUUGUU-------CCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 14578 | 0.81 | 0.114849 |
Target: 5'- gGCGGGCGCGCGGCUCucuAAgGAcGCCg -3' miRNA: 3'- -UGCCCGCGCGCCGGGuu-UUgUUcCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 98019 | 0.81 | 0.120938 |
Target: 5'- cUGGGCGUGCGcGcCCCAGAGCAugaacaccagcGGGCCg -3' miRNA: 3'- uGCCCGCGCGC-C-GGGUUUUGU-----------UCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home