Results 1 - 20 of 1036 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6349 | 3' | -59 | NC_001847.1 | + | 130967 | 1.1 | 0.001134 |
Target: 5'- cACGGGCGCGCGGCCCAAAACAAGGCCc -3' miRNA: 3'- -UGCCCGCGCGCCGGGUUUUGUUCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 116143 | 0.92 | 0.020749 |
Target: 5'- -gGGGCGCGCGGCCCGAGGCGcuggcGGCCg -3' miRNA: 3'- ugCCCGCGCGCCGGGUUUUGUu----CCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 106804 | 0.89 | 0.03204 |
Target: 5'- cCGGGCGCGCGGCCCcgcGGGGCGccGGGCCc -3' miRNA: 3'- uGCCCGCGCGCCGGG---UUUUGU--UCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 3991 | 0.89 | 0.03204 |
Target: 5'- cCGGGCGCGCGGCCCcgcGGGGCGccGGGCCc -3' miRNA: 3'- uGCCCGCGCGCCGGG---UUUUGU--UCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 80550 | 0.87 | 0.048012 |
Target: 5'- cGCGGGCGCGCGccgccagcgccGCCCAGcccGCGGGGCCg -3' miRNA: 3'- -UGCCCGCGCGC-----------CGGGUUu--UGUUCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 125813 | 0.86 | 0.053447 |
Target: 5'- gGCGGGCGUGCaGCUCAAAGCGggucGGGCCg -3' miRNA: 3'- -UGCCCGCGCGcCGGGUUUUGU----UCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 107043 | 0.86 | 0.056384 |
Target: 5'- gGCGGugucGCGCGCGGCCCcGGGCAGGcGCCa -3' miRNA: 3'- -UGCC----CGCGCGCCGGGuUUUGUUC-CGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 80817 | 0.84 | 0.067945 |
Target: 5'- cCGGGCGCGUgaGGCgCCGGAuaGCGAGGCCg -3' miRNA: 3'- uGCCCGCGCG--CCG-GGUUU--UGUUCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 26516 | 0.83 | 0.081772 |
Target: 5'- cCGGGCGCGgGGCCgGGGGCGuucGGCCa -3' miRNA: 3'- uGCCCGCGCgCCGGgUUUUGUu--CCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 129329 | 0.83 | 0.081772 |
Target: 5'- cCGGGCGCGgGGCCgGGGGCGuucGGCCa -3' miRNA: 3'- uGCCCGCGCgCCGGgUUUUGUu--CCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 67827 | 0.83 | 0.081772 |
Target: 5'- cGCGGcgucCGCGCGGCCCAAAA-AGGGCCg -3' miRNA: 3'- -UGCCc---GCGCGCCGGGUUUUgUUCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 59906 | 0.82 | 0.10086 |
Target: 5'- cCGGGCGCGUGGuugccuCCCAGGACcuGGCCu -3' miRNA: 3'- uGCCCGCGCGCC------GGGUUUUGuuCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 17863 | 0.81 | 0.111914 |
Target: 5'- uCGGGCGCGgGGCgccCCAAAACGGcGGCCc -3' miRNA: 3'- uGCCCGCGCgCCG---GGUUUUGUU-CCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 14578 | 0.81 | 0.114849 |
Target: 5'- gGCGGGCGCGCGGCUCucuAAgGAcGCCg -3' miRNA: 3'- -UGCCCGCGCGCCGGGuu-UUgUUcCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 41820 | 0.81 | 0.117857 |
Target: 5'- cGCGGGCGgGCGGCgCGGGuccCAGGGCUg -3' miRNA: 3'- -UGCCCGCgCGCCGgGUUUu--GUUCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 33628 | 0.81 | 0.120938 |
Target: 5'- gACGGGCGCgGCGGCUgAccGCGAGGCg -3' miRNA: 3'- -UGCCCGCG-CGCCGGgUuuUGUUCCGg -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 98019 | 0.81 | 0.120938 |
Target: 5'- cUGGGCGUGCGcGcCCCAGAGCAugaacaccagcGGGCCg -3' miRNA: 3'- uGCCCGCGCGC-C-GGGUUUUGU-----------UCCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 30750 | 0.81 | 0.124093 |
Target: 5'- gGCGGGCGUagaccGCGGCCCGcuGCAGcGCCg -3' miRNA: 3'- -UGCCCGCG-----CGCCGGGUuuUGUUcCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 125236 | 0.81 | 0.124093 |
Target: 5'- cGCGGGgGCGgGGCCCGAGACcacgcGGUCg -3' miRNA: 3'- -UGCCCgCGCgCCGGGUUUUGuu---CCGG- -5' |
|||||||
6349 | 3' | -59 | NC_001847.1 | + | 22423 | 0.81 | 0.124093 |
Target: 5'- cGCGGGgGCGgGGCCCGAGACcacgcGGUCg -3' miRNA: 3'- -UGCCCgCGCgCCGGGUUUUGuu---CCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home