miRNA display CGI


Results 1 - 20 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 47 0.66 0.775115
Target:  5'- cGCGcGGCGCgugcauugcgGCGGgCgGGGGCGGGGUg -3'
miRNA:   3'- -UGC-CCGCG----------CGCCgGgUUUUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 76 0.66 0.746892
Target:  5'- gGCGGGCcCG-GGCCCGcu-CuGGGCUc -3'
miRNA:   3'- -UGCCCGcGCgCCGGGUuuuGuUCCGG- -5'
6349 3' -59 NC_001847.1 + 139 0.67 0.698002
Target:  5'- cGCGGGCcuCG-GGCCCcGGccGgGGGGCCg -3'
miRNA:   3'- -UGCCCGc-GCgCCGGGuUU--UgUUCCGG- -5'
6349 3' -59 NC_001847.1 + 216 0.68 0.657863
Target:  5'- --cGGCGCccgGgGGCCCGAGcCcGGGCCu -3'
miRNA:   3'- ugcCCGCG---CgCCGGGUUUuGuUCCGG- -5'
6349 3' -59 NC_001847.1 + 252 0.68 0.657863
Target:  5'- gACGcccGGCGCccaGgGGCCCGAGcCcgGGGGCCg -3'
miRNA:   3'- -UGC---CCGCG---CgCCGGGUUUuG--UUCCGG- -5'
6349 3' -59 NC_001847.1 + 427 0.68 0.60729
Target:  5'- gGCGGGCGgGCGGCggc-GGCGGcGGCa -3'
miRNA:   3'- -UGCCCGCgCGCCGgguuUUGUU-CCGg -5'
6349 3' -59 NC_001847.1 + 619 0.75 0.278062
Target:  5'- -aGcGGCGCGCGGCCCGc-GCcuccccccgcccccGAGGCCc -3'
miRNA:   3'- ugC-CCGCGCGCCGGGUuuUG--------------UUCCGG- -5'
6349 3' -59 NC_001847.1 + 746 0.66 0.765821
Target:  5'- cGCGGGCcCc---CCUAGGGCGAGGCCg -3'
miRNA:   3'- -UGCCCGcGcgccGGGUUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 876 0.79 0.160092
Target:  5'- cGCGcGGCG-GCGGCCCGcgcCGGGGCCg -3'
miRNA:   3'- -UGC-CCGCgCGCCGGGUuuuGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 1093 0.75 0.293267
Target:  5'- cCGGGCGcCGCGGCCgCGGgcGGCGccGCCg -3'
miRNA:   3'- uGCCCGC-GCGCCGG-GUU--UUGUucCGG- -5'
6349 3' -59 NC_001847.1 + 1144 0.78 0.176969
Target:  5'- gGCGccucGGCGCGCGGCuCCGGcAGCGcGGCCg -3'
miRNA:   3'- -UGC----CCGCGCGCCG-GGUU-UUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 1428 0.79 0.160092
Target:  5'- cGCGGuGCGCG-GGCCCAGGcGCGuGGCCa -3'
miRNA:   3'- -UGCC-CGCGCgCCGGGUUU-UGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 1531 0.77 0.220269
Target:  5'- uCGGcGCGCGCGaaggcGCCCGGGccgaagacgcgccGCGAGGCCa -3'
miRNA:   3'- uGCC-CGCGCGC-----CGGGUUU-------------UGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 1673 0.71 0.452182
Target:  5'- cCGGGCcgucGCGCGGCCaguucuCGGGGUCc -3'
miRNA:   3'- uGCCCG----CGCGCCGGguuuu-GUUCCGG- -5'
6349 3' -59 NC_001847.1 + 1927 0.68 0.637639
Target:  5'- cCGcGGCGCgGCGGCCacuc---GGGCCg -3'
miRNA:   3'- uGC-CCGCG-CGCCGGguuuuguUCCGG- -5'
6349 3' -59 NC_001847.1 + 1937 0.75 0.286578
Target:  5'- aGCcGGCGCGCGGCgCAGAGCuccuccagcgAGGGCa -3'
miRNA:   3'- -UGcCCGCGCGCCGgGUUUUG----------UUCCGg -5'
6349 3' -59 NC_001847.1 + 2110 0.68 0.604261
Target:  5'- gGCGGGCcgcgaucucggccaGCGCcucggGGUCgAAGGCGAGcGCCg -3'
miRNA:   3'- -UGCCCG--------------CGCG-----CCGGgUUUUGUUC-CGG- -5'
6349 3' -59 NC_001847.1 + 2265 0.71 0.461303
Target:  5'- cCGGGCGgcaCGCGGCggaagccgCCGucggcGGCGGGGCCg -3'
miRNA:   3'- uGCCCGC---GCGCCG--------GGUu----UUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 2333 0.67 0.667949
Target:  5'- gGCGGGCaGCgGCGGCUCccgccGCGccGGCCc -3'
miRNA:   3'- -UGCCCG-CG-CGCCGGGuuu--UGUu-CCGG- -5'
6349 3' -59 NC_001847.1 + 2426 0.71 0.47983
Target:  5'- -gGGGCccccCGCGGCggCCG--GCAGGGCCg -3'
miRNA:   3'- ugCCCGc---GCGCCG--GGUuuUGUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.