miRNA display CGI


Results 1 - 20 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 135038 0.73 0.374871
Target:  5'- -gGGGCGCGgGGCgCCGGAccCAGGGgCg -3'
miRNA:   3'- ugCCCGCGCgCCG-GGUUUu-GUUCCgG- -5'
6349 3' -59 NC_001847.1 + 135012 0.74 0.321241
Target:  5'- -gGGGCcCGaGGCCCGcGGGCGGGGCCg -3'
miRNA:   3'- ugCCCGcGCgCCGGGU-UUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 134954 0.72 0.425428
Target:  5'- gGCGGGgGCGgGGgCgGGGGCcccgGGGGCCa -3'
miRNA:   3'- -UGCCCgCGCgCCgGgUUUUG----UUCCGG- -5'
6349 3' -59 NC_001847.1 + 134916 0.75 0.267232
Target:  5'- -gGGGCGCGaGGCCC-GGGCucGGGCCc -3'
miRNA:   3'- ugCCCGCGCgCCGGGuUUUGu-UCCGG- -5'
6349 3' -59 NC_001847.1 + 134869 0.74 0.328538
Target:  5'- cGCGGGCuCgGCGGCCCccGGGCucGGGCCc -3'
miRNA:   3'- -UGCCCGcG-CGCCGGGu-UUUGu-UCCGG- -5'
6349 3' -59 NC_001847.1 + 134799 0.7 0.547259
Target:  5'- -gGGGCGCGaaGCCCGGGAgGgacgcGGGCg -3'
miRNA:   3'- ugCCCGCGCgcCGGGUUUUgU-----UCCGg -5'
6349 3' -59 NC_001847.1 + 134765 0.74 0.321241
Target:  5'- cGCGguccGGCGCGCGGCgCgCGGGGCG-GGCCc -3'
miRNA:   3'- -UGC----CCGCGCGCCG-G-GUUUUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 134645 0.67 0.667949
Target:  5'- gGCGGGCcggcagcagGCGCGGaggcgcgggcaCCCAuGACGGcGCCg -3'
miRNA:   3'- -UGCCCG---------CGCGCC-----------GGGUuUUGUUcCGG- -5'
6349 3' -59 NC_001847.1 + 134532 0.72 0.425428
Target:  5'- cGCGGGcCGCGCGccGCUgCGGAGCGgccgcggaGGGCCa -3'
miRNA:   3'- -UGCCC-GCGCGC--CGG-GUUUUGU--------UCCGG- -5'
6349 3' -59 NC_001847.1 + 134509 0.67 0.667949
Target:  5'- gUGGGcCGUGCGGCCgCGGcGCAuguGGUg -3'
miRNA:   3'- uGCCC-GCGCGCCGG-GUUuUGUu--CCGg -5'
6349 3' -59 NC_001847.1 + 134254 0.73 0.351163
Target:  5'- gGCGGcCGCgGCGGCCCc-GGCGcGGGCCg -3'
miRNA:   3'- -UGCCcGCG-CGCCGGGuuUUGU-UCCGG- -5'
6349 3' -59 NC_001847.1 + 134211 0.68 0.626505
Target:  5'- cCGGGCGCGggcucgggcuuccCGGCgCCGgcGGGCGGcGGCCn -3'
miRNA:   3'- uGCCCGCGC-------------GCCG-GGU--UUUGUU-CCGG- -5'
6349 3' -59 NC_001847.1 + 134205 0.8 0.14468
Target:  5'- aGCGGcGCGCGCGGgCCGAGggcggcggugGgAAGGCCg -3'
miRNA:   3'- -UGCC-CGCGCGCCgGGUUU----------UgUUCCGG- -5'
6349 3' -59 NC_001847.1 + 134132 0.76 0.25493
Target:  5'- cGCGGGCG-GCGGCCUgguGGAGCGcGuGCCg -3'
miRNA:   3'- -UGCCCGCgCGCCGGG---UUUUGUuC-CGG- -5'
6349 3' -59 NC_001847.1 + 133969 0.67 0.717782
Target:  5'- nCGcGGCG-GUGGCCUucuGCGcGGCCg -3'
miRNA:   3'- uGC-CCGCgCGCCGGGuuuUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 133926 0.72 0.398796
Target:  5'- uGCGGGCgGCGCGcgcuggagcuggcGCCCGacGAGCugccGGCCg -3'
miRNA:   3'- -UGCCCG-CGCGC-------------CGGGU--UUUGuu--CCGG- -5'
6349 3' -59 NC_001847.1 + 133788 0.67 0.698002
Target:  5'- gACGGGCGCaaggacaUGGCCgc--GCAGGGCg -3'
miRNA:   3'- -UGCCCGCGc------GCCGGguuuUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 133730 0.71 0.47052
Target:  5'- gGCGGGCGCGgGGCCgCGu-GCcu-GCCu -3'
miRNA:   3'- -UGCCCGCGCgCCGG-GUuuUGuucCGG- -5'
6349 3' -59 NC_001847.1 + 133597 0.71 0.469594
Target:  5'- uCGcGGCGCGUcuucGGCCCGGGcgccuucgcgcgcGcCGAGGCCg -3'
miRNA:   3'- uGC-CCGCGCG----CCGGGUUU-------------U-GUUCCGG- -5'
6349 3' -59 NC_001847.1 + 133589 0.68 0.636627
Target:  5'- cGCGGGCGCGCuaucgggcgggcgGGCUUggGcggcACAAGcGCg -3'
miRNA:   3'- -UGCCCGCGCG-------------CCGGGuuU----UGUUC-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.