miRNA display CGI

Results 21 - 40 of 1036 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6349	3'	-59	NC_001847.1	+	133538	0.68	0.627517
	Target:  5'- cGCGGcgcagugcgccGCGCGCuGGCCCGAGcgGCGcgcuGGCg -3' miRNA:   3'- -UGCC-----------CGCGCG-CCGGGUUU--UGUu---CCGg -5'
6349	3'	-59	NC_001847.1	+	133476	0.66	0.737275
	Target:  5'- cUGGccGCGCGaCGGCCCGgccgucGGGCAGGcGCa -3' miRNA:   3'- uGCC--CGCGC-GCCGGGU------UUUGUUC-CGg -5'
6349	3'	-59	NC_001847.1	+	133398	0.66	0.75641
	Target:  5'- cGCGGuggaguaccucuGCGCGCGGCuggCCGcgGCGcGGCg -3' miRNA:   3'- -UGCC------------CGCGCGCCG---GGUuuUGUuCCGg -5'
6349	3'	-59	NC_001847.1	+	133320	0.71	0.47983
	Target:  5'- gACGGGCGCgccggacgugaGCGcGCUCGGcgcGCAGGGCg -3' miRNA:   3'- -UGCCCGCG-----------CGC-CGGGUUu--UGUUCCGg -5'
6349	3'	-59	NC_001847.1	+	133204	0.73	0.366849
	Target:  5'- gACGaGCGCcgGCGGCCCGAGugGccGCCg -3' miRNA:   3'- -UGCcCGCG--CGCCGGGUUUugUucCGG- -5'
6349	3'	-59	NC_001847.1	+	133182	0.67	0.667949
	Target:  5'- cGCGGGCGCGgGcuGCCCucgcuggaGGAGCucuGcGCCg -3' miRNA:   3'- -UGCCCGCGCgC--CGGG--------UUUUGuu-C-CGG- -5'
6349	3'	-59	NC_001847.1	+	133094	0.66	0.746892
	Target:  5'- uGCGgcGGCGCGUGGCCUGGAugucGCAGaucgcGGaCCc -3' miRNA:   3'- -UGC--CCGCGCGCCGGGUUU----UGUU-----CC-GG- -5'
6349	3'	-59	NC_001847.1	+	133028	0.67	0.667949
	Target:  5'- cCGaGGCGCuggccgagaucGCGGCCCGccGCcgcgcGGGCCc -3' miRNA:   3'- uGC-CCGCG-----------CGCCGGGUuuUGu----UCCGG- -5'
6349	3'	-59	NC_001847.1	+	132929	0.68	0.627517
	Target:  5'- cCGcGGCGCugGCGGCCUAcuGCcgccccGAGGUCg -3' miRNA:   3'- uGC-CCGCG--CGCCGGGUuuUG------UUCCGG- -5'
6349	3'	-59	NC_001847.1	+	132779	0.74	0.302836
	Target:  5'- cGCGGGCGCgcgacuggaccucauGCGGCCCGu-GCAAaacGGCg -3' miRNA:   3'- -UGCCCGCG---------------CGCCGGGUuuUGUU---CCGg -5'
6349	3'	-59	NC_001847.1	+	132704	0.72	0.399638
	Target:  5'- gGCGaGGCG-GCGGCCCu--GCc-GGCCg -3' miRNA:   3'- -UGC-CCGCgCGCCGGGuuuUGuuCCGG- -5'
6349	3'	-59	NC_001847.1	+	132617	0.68	0.627517
	Target:  5'- aGCGGuCcCGCGGCCCGGcAGCAAagcgcgaggcGGCCc -3' miRNA:   3'- -UGCCcGcGCGCCGGGUU-UUGUU----------CCGG- -5'
6349	3'	-59	NC_001847.1	+	132613	0.68	0.617398
	Target:  5'- gGCGGGaGCGCcgccgGGUCCGAGGgAaggaagaaGGGCCg -3' miRNA:   3'- -UGCCCgCGCG-----CCGGGUUUUgU--------UCCGG- -5'
6349	3'	-59	NC_001847.1	+	132551	0.71	0.461303
	Target:  5'- gGCGGGCucgcGUGCGGCC----GCGGcGGCCg -3' miRNA:   3'- -UGCCCG----CGCGCCGGguuuUGUU-CCGG- -5'
6349	3'	-59	NC_001847.1	+	132455	0.69	0.567108
	Target:  5'- -gGGGCGCcgcggGCGGaCCCGGAGgacgggucCGAGGCg -3' miRNA:   3'- ugCCCGCG-----CGCC-GGGUUUU--------GUUCCGg -5'
6349	3'	-59	NC_001847.1	+	132380	0.72	0.394602
	Target:  5'- gGCGGGgGCGcCGGCgCCGGcGCcgccgcgccgggccgGGGGCCg -3' miRNA:   3'- -UGCCCgCGC-GCCG-GGUUuUG---------------UUCCGG- -5'
6349	3'	-59	NC_001847.1	+	132349	0.73	0.366849
	Target:  5'- gGCGGccGCGCucGCGGCCCug---GAGGCCg -3' miRNA:   3'- -UGCC--CGCG--CGCCGGGuuuugUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	132267	0.77	0.215509
	Target:  5'- cGCGcGGCGCgGCGGCCCGc-GCGucGGCCu -3' miRNA:   3'- -UGC-CCGCG-CGCCGGGUuuUGUu-CCGG- -5'
6349	3'	-59	NC_001847.1	+	132217	0.66	0.746892
	Target:  5'- gGCGGccGCGCugGCGGCgCGGAcCGuGGCCc -3' miRNA:   3'- -UGCC--CGCG--CGCCGgGUUUuGUuCCGG- -5'
6349	3'	-59	NC_001847.1	+	132145	0.77	0.215509
	Target:  5'- cGCGGuggagcGCGCGCGGCuCCAGcGCGcGGCCc -3' miRNA:   3'- -UGCC------CGCGCGCCG-GGUUuUGUuCCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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