miRNA display CGI


Results 1 - 20 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 117921 0.65 0.780633
Target:  5'- gACGcGGUGUGgGGCaacguaagcgccgCAGAGCuGGGCCu -3'
miRNA:   3'- -UGC-CCGCGCgCCGg------------GUUUUGuUCCGG- -5'
6349 3' -59 NC_001847.1 + 79076 0.65 0.780633
Target:  5'- cCGGGCGCGUGcgacgugugcccguGCgCCGcgccgugccugugGAAgAAGGCCc -3'
miRNA:   3'- uGCCCGCGCGC--------------CG-GGU-------------UUUgUUCCGG- -5'
6349 3' -59 NC_001847.1 + 34106 0.66 0.774191
Target:  5'- gGCGGGUGCGCaaauugggaccccGGCCgCG--GCGGcGGCa -3'
miRNA:   3'- -UGCCCGCGCG-------------CCGG-GUuuUGUU-CCGg -5'
6349 3' -59 NC_001847.1 + 63807 0.66 0.774191
Target:  5'- gUGGGuUGgGUGGCCCu-GGCAgcuccacguccgcGGGCCc -3'
miRNA:   3'- uGCCC-GCgCGCCGGGuuUUGU-------------UCCGG- -5'
6349 3' -59 NC_001847.1 + 97114 0.66 0.765821
Target:  5'- gGCGcGGCgGCGCGcGCCCAcAGCAcccGCg -3'
miRNA:   3'- -UGC-CCG-CGCGC-CGGGUuUUGUuc-CGg -5'
6349 3' -59 NC_001847.1 + 89839 0.66 0.765821
Target:  5'- aACGcGCGCcuGCGaccGCCgGcuGCAAGGCCg -3'
miRNA:   3'- -UGCcCGCG--CGC---CGGgUuuUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 68618 0.66 0.765821
Target:  5'- aGCGGGC-CGgGGaCCgCAAGGCGGcGcGCCu -3'
miRNA:   3'- -UGCCCGcGCgCC-GG-GUUUUGUU-C-CGG- -5'
6349 3' -59 NC_001847.1 + 39864 0.66 0.765821
Target:  5'- cCGGuaGgcuucguccaCGCGGCCCGGGuCcAGGCCg -3'
miRNA:   3'- uGCCcgC----------GCGCCGGGUUUuGuUCCGG- -5'
6349 3' -59 NC_001847.1 + 10744 0.66 0.765821
Target:  5'- -gGGGgGCGgGGCCCc--GC--GGCCc -3'
miRNA:   3'- ugCCCgCGCgCCGGGuuuUGuuCCGG- -5'
6349 3' -59 NC_001847.1 + 746 0.66 0.765821
Target:  5'- cGCGGGCcCc---CCUAGGGCGAGGCCg -3'
miRNA:   3'- -UGCCCGcGcgccGGGUUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 8074 0.66 0.775115
Target:  5'- aGCGGGgGgGCcuGUCCAccacGGCGAGGCg -3'
miRNA:   3'- -UGCCCgCgCGc-CGGGUu---UUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 4389 0.66 0.775115
Target:  5'- cGCGcGCGcCGCGGCCCA-GGCGcuGUCc -3'
miRNA:   3'- -UGCcCGC-GCGCCGGGUuUUGUucCGG- -5'
6349 3' -59 NC_001847.1 + 97535 0.66 0.775115
Target:  5'- uCGGGCaaaagaGCGCGGgCCGGcccccGGCCg -3'
miRNA:   3'- uGCCCG------CGCGCCgGGUUuuguuCCGG- -5'
6349 3' -59 NC_001847.1 + 82734 0.66 0.775115
Target:  5'- cGCGGGCccaGC-GCCUGGAGCAcGGCg -3'
miRNA:   3'- -UGCCCGcg-CGcCGGGUUUUGUuCCGg -5'
6349 3' -59 NC_001847.1 + 74273 0.66 0.775115
Target:  5'- cCGGGCGCgGCcGCCCucgcgcuGGACGcccuGGcGCCg -3'
miRNA:   3'- uGCCCGCG-CGcCGGGu------UUUGU----UC-CGG- -5'
6349 3' -59 NC_001847.1 + 58479 0.66 0.775115
Target:  5'- aACGGGUcgaaaaagGCGCccuccccGCCCucGGGCAGGGCg -3'
miRNA:   3'- -UGCCCG--------CGCGc------CGGGu-UUUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 115037 0.66 0.775115
Target:  5'- -aGGGCG-GCGaGUCCGGGGCAGaGCUc -3'
miRNA:   3'- ugCCCGCgCGC-CGGGUUUUGUUcCGG- -5'
6349 3' -59 NC_001847.1 + 83721 0.66 0.775115
Target:  5'- cGCGcGCGgGCGGCuCCGucuGCGccGCCg -3'
miRNA:   3'- -UGCcCGCgCGCCG-GGUuu-UGUucCGG- -5'
6349 3' -59 NC_001847.1 + 47825 0.66 0.775115
Target:  5'- gACGGGaUGCcgGCGGCCaaugcgcGCAAaucGGCCg -3'
miRNA:   3'- -UGCCC-GCG--CGCCGGguuu---UGUU---CCGG- -5'
6349 3' -59 NC_001847.1 + 47641 0.66 0.775115
Target:  5'- gGCGGGCaCGUGcaagcaGCCgCcGAGCAcGGCCa -3'
miRNA:   3'- -UGCCCGcGCGC------CGG-GuUUUGUuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.