miRNA display CGI

Results 1 - 20 of 1036 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6349	3'	-59	NC_001847.1	+	130967	1.1	0.001134
	Target:  5'- cACGGGCGCGCGGCCCAAAACAAGGCCc -3' miRNA:   3'- -UGCCCGCGCGCCGGGUUUUGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	116143	0.92	0.020749
	Target:  5'- -gGGGCGCGCGGCCCGAGGCGcuggcGGCCg -3' miRNA:   3'- ugCCCGCGCGCCGGGUUUUGUu----CCGG- -5'
6349	3'	-59	NC_001847.1	+	3991	0.89	0.03204
	Target:  5'- cCGGGCGCGCGGCCCcgcGGGGCGccGGGCCc -3' miRNA:   3'- uGCCCGCGCGCCGGG---UUUUGU--UCCGG- -5'
6349	3'	-59	NC_001847.1	+	106804	0.89	0.03204
	Target:  5'- cCGGGCGCGCGGCCCcgcGGGGCGccGGGCCc -3' miRNA:   3'- uGCCCGCGCGCCGGG---UUUUGU--UCCGG- -5'
6349	3'	-59	NC_001847.1	+	80550	0.87	0.048012
	Target:  5'- cGCGGGCGCGCGccgccagcgccGCCCAGcccGCGGGGCCg -3' miRNA:   3'- -UGCCCGCGCGC-----------CGGGUUu--UGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	125813	0.86	0.053447
	Target:  5'- gGCGGGCGUGCaGCUCAAAGCGggucGGGCCg -3' miRNA:   3'- -UGCCCGCGCGcCGGGUUUUGU----UCCGG- -5'
6349	3'	-59	NC_001847.1	+	107043	0.86	0.056384
	Target:  5'- gGCGGugucGCGCGCGGCCCcGGGCAGGcGCCa -3' miRNA:   3'- -UGCC----CGCGCGCCGGGuUUUGUUC-CGG- -5'
6349	3'	-59	NC_001847.1	+	80817	0.84	0.067945
	Target:  5'- cCGGGCGCGUgaGGCgCCGGAuaGCGAGGCCg -3' miRNA:   3'- uGCCCGCGCG--CCG-GGUUU--UGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	129329	0.83	0.081772
	Target:  5'- cCGGGCGCGgGGCCgGGGGCGuucGGCCa -3' miRNA:   3'- uGCCCGCGCgCCGGgUUUUGUu--CCGG- -5'
6349	3'	-59	NC_001847.1	+	26516	0.83	0.081772
	Target:  5'- cCGGGCGCGgGGCCgGGGGCGuucGGCCa -3' miRNA:   3'- uGCCCGCGCgCCGGgUUUUGUu--CCGG- -5'
6349	3'	-59	NC_001847.1	+	67827	0.83	0.081772
	Target:  5'- cGCGGcgucCGCGCGGCCCAAAA-AGGGCCg -3' miRNA:   3'- -UGCCc---GCGCGCCGGGUUUUgUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	59906	0.82	0.10086
	Target:  5'- cCGGGCGCGUGGuugccuCCCAGGACcuGGCCu -3' miRNA:   3'- uGCCCGCGCGCC------GGGUUUUGuuCCGG- -5'
6349	3'	-59	NC_001847.1	+	30750	0.81	0.124093
	Target:  5'- gGCGGGCGUagaccGCGGCCCGcuGCAGcGCCg -3' miRNA:   3'- -UGCCCGCG-----CGCCGGGUuuUGUUcCGG- -5'
6349	3'	-59	NC_001847.1	+	98019	0.81	0.120938
	Target:  5'- cUGGGCGUGCGcGcCCCAGAGCAugaacaccagcGGGCCg -3' miRNA:   3'- uGCCCGCGCGC-C-GGGUUUUGU-----------UCCGG- -5'
6349	3'	-59	NC_001847.1	+	41820	0.81	0.117857
	Target:  5'- cGCGGGCGgGCGGCgCGGGuccCAGGGCUg -3' miRNA:   3'- -UGCCCGCgCGCCGgGUUUu--GUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	22423	0.81	0.124093
	Target:  5'- cGCGGGgGCGgGGCCCGAGACcacgcGGUCg -3' miRNA:   3'- -UGCCCgCGCgCCGGGUUUUGuu---CCGG- -5'
6349	3'	-59	NC_001847.1	+	33628	0.81	0.120938
	Target:  5'- gACGGGCGCgGCGGCUgAccGCGAGGCg -3' miRNA:   3'- -UGCCCGCG-CGCCGGgUuuUGUUCCGg -5'
6349	3'	-59	NC_001847.1	+	14578	0.81	0.114849
	Target:  5'- gGCGGGCGCGCGGCUCucuAAgGAcGCCg -3' miRNA:   3'- -UGCCCGCGCGCCGGGuu-UUgUUcCGG- -5'
6349	3'	-59	NC_001847.1	+	17863	0.81	0.111914
	Target:  5'- uCGGGCGCGgGGCgccCCAAAACGGcGGCCc -3' miRNA:   3'- uGCCCGCGCgCCG---GGUUUUGUU-CCGG- -5'
6349	3'	-59	NC_001847.1	+	125236	0.81	0.124093
	Target:  5'- cGCGGGgGCGgGGCCCGAGACcacgcGGUCg -3' miRNA:   3'- -UGCCCgCGCgCCGGGUUUUGuu---CCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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