miRNA display CGI

Results 21 - 40 of 1036 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6349	3'	-59	NC_001847.1	+	86394	0.8	0.137493
	Target:  5'- gGCGGGCGCGCGGCUgAGucauacuGCAccGCCg -3' miRNA:   3'- -UGCCCGCGCGCCGGgUUu------UGUucCGG- -5'
6349	3'	-59	NC_001847.1	+	28322	0.8	0.134023
	Target:  5'- gGCGGGCGcCG-GGCCCGGcgccccGCGGGGCCg -3' miRNA:   3'- -UGCCCGC-GCgCCGGGUUu-----UGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	131135	0.8	0.134023
	Target:  5'- gGCGGGCGcCG-GGCCCGGcgccccGCGGGGCCg -3' miRNA:   3'- -UGCCCGC-GCgCCGGGUUu-----UGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	4813	0.8	0.14468
	Target:  5'- gACGaGGCGCGCGauGCCCuuGAGCGugGGGCCg -3' miRNA:   3'- -UGC-CCGCGCGC--CGGGu-UUUGU--UCCGG- -5'
6349	3'	-59	NC_001847.1	+	45510	0.8	0.134023
	Target:  5'- gGCGGGCGCcgccgccggGCGGCgC-GGACGGGGCCg -3' miRNA:   3'- -UGCCCGCG---------CGCCGgGuUUUGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	34365	0.8	0.137493
	Target:  5'- gGCGGGCGCugauGCGGCCgAAacAACGGcGGCCg -3' miRNA:   3'- -UGCCCGCG----CGCCGGgUU--UUGUU-CCGG- -5'
6349	3'	-59	NC_001847.1	+	41176	0.8	0.134023
	Target:  5'- cGCGGGCGCGCGuguuaagagggcGCCCAGAA-AAGGCg -3' miRNA:   3'- -UGCCCGCGCGC------------CGGGUUUUgUUCCGg -5'
6349	3'	-59	NC_001847.1	+	134205	0.8	0.14468
	Target:  5'- aGCGGcGCGCGCGGgCCGAGggcggcggugGgAAGGCCg -3' miRNA:   3'- -UGCC-CGCGCGCCgGGUUU----------UgUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	115712	0.8	0.14468
	Target:  5'- aGCGGGCGCGCGGCCUuuGGCGcucCCg -3' miRNA:   3'- -UGCCCGCGCGCCGGGuuUUGUuccGG- -5'
6349	3'	-59	NC_001847.1	+	876	0.79	0.160092
	Target:  5'- cGCGcGGCG-GCGGCCCGcgcCGGGGCCg -3' miRNA:   3'- -UGC-CCGCgCGCCGGGUuuuGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	104241	0.79	0.160092
	Target:  5'- cGCGGuGCGCG-GGCCCAGGcGCGuGGCCa -3' miRNA:   3'- -UGCC-CGCGCgCCGGGUUU-UGUuCCGG- -5'
6349	3'	-59	NC_001847.1	+	7738	0.79	0.163758
	Target:  5'- cGCGGGCGCggagGCGGCggCCAGGGCAAgcccgacGGCCg -3' miRNA:   3'- -UGCCCGCG----CGCCG--GGUUUUGUU-------CCGG- -5'
6349	3'	-59	NC_001847.1	+	22121	0.79	0.16417
	Target:  5'- aGCGGGCGCGCccugGGCCCGGcGGCGGcGGCg -3' miRNA:   3'- -UGCCCGCGCG----CCGGGUU-UUGUU-CCGg -5'
6349	3'	-59	NC_001847.1	+	101142	0.79	0.16417
	Target:  5'- gAUGGGCGCGgGGgCUggGGcCGGGGCCg -3' miRNA:   3'- -UGCCCGCGCgCCgGGuuUU-GUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	37675	0.79	0.156106
	Target:  5'- cGCGGGCuuagcGCGCGGCCCu-GGCGcGGCUg -3' miRNA:   3'- -UGCCCG-----CGCGCCGGGuuUUGUuCCGG- -5'
6349	3'	-59	NC_001847.1	+	47685	0.79	0.16417
	Target:  5'- aGCGGGCGCGC-GCC----GCGGGGCCg -3' miRNA:   3'- -UGCCCGCGCGcCGGguuuUGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	103689	0.79	0.160092
	Target:  5'- cGCGcGGCG-GCGGCCCGcgcCGGGGCCg -3' miRNA:   3'- -UGC-CCGCgCGCCGGGUuuuGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	1428	0.79	0.160092
	Target:  5'- cGCGGuGCGCG-GGCCCAGGcGCGuGGCCa -3' miRNA:   3'- -UGCC-CGCGCgCCGGGUUU-UGUuCCGG- -5'
6349	3'	-59	NC_001847.1	+	54672	0.79	0.16417
	Target:  5'- aACGGGgaGCGCGGCCCGAcGGCGGcGGCg -3' miRNA:   3'- -UGCCCg-CGCGCCGGGUU-UUGUU-CCGg -5'
6349	3'	-59	NC_001847.1	+	30432	0.79	0.160092
	Target:  5'- gGCGGGCGCGgaGGCgCCGGGGCugcacgagguGGGCCg -3' miRNA:   3'- -UGCCCGCGCg-CCG-GGUUUUGu---------UCCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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