miRNA display CGI

Results 41 - 60 of 1036 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6349	3'	-59	NC_001847.1	+	37675	0.79	0.156106
	Target:  5'- cGCGGGCuuagcGCGCGGCCCu-GGCGcGGCUg -3' miRNA:   3'- -UGCCCG-----CGCGCCGGGuuUUGUuCCGG- -5'
6349	3'	-59	NC_001847.1	+	43578	0.78	0.176969
	Target:  5'- cGCGGGCGaCGCGcGCCCcagcguGGCGcugGGGCCg -3' miRNA:   3'- -UGCCCGC-GCGC-CGGGuu----UUGU---UCCGG- -5'
6349	3'	-59	NC_001847.1	+	103957	0.78	0.176969
	Target:  5'- gGCGccucGGCGCGCGGCuCCGGcAGCGcGGCCg -3' miRNA:   3'- -UGC----CCGCGCGCCG-GGUU-UUGUuCCGG- -5'
6349	3'	-59	NC_001847.1	+	75271	0.78	0.176529
	Target:  5'- cGCGGaggccgcGCGCGCGGCCCucGGCGAccgcgccuGGCCg -3' miRNA:   3'- -UGCC-------CGCGCGCCGGGuuUUGUU--------CCGG- -5'
6349	3'	-59	NC_001847.1	+	22572	0.78	0.190648
	Target:  5'- aGCGGuaaGCGgGCGcCCCGGGGCAGGGCCc -3' miRNA:   3'- -UGCC---CGCgCGCcGGGUUUUGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	19191	0.78	0.176529
	Target:  5'- gGCGGGgGCggggucuGUGGCCCAGAcgGCGAGuGCCg -3' miRNA:   3'- -UGCCCgCG-------CGCCGGGUUU--UGUUC-CGG- -5'
6349	3'	-59	NC_001847.1	+	68215	0.78	0.176969
	Target:  5'- -gGGGCGCaCGGgCCGcgGCGGGGCCg -3' miRNA:   3'- ugCCCGCGcGCCgGGUuuUGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	111292	0.78	0.172607
	Target:  5'- -gGGGCgGCGCucGGCCgGGGGCGGGGCCc -3' miRNA:   3'- ugCCCG-CGCG--CCGGgUUUUGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	26761	0.78	0.185988
	Target:  5'- cGCGGGUGCGCGGCCUGGucaguGCGcGcGCCc -3' miRNA:   3'- -UGCCCGCGCGCCGGGUUu----UGUuC-CGG- -5'
6349	3'	-59	NC_001847.1	+	52519	0.78	0.168341
	Target:  5'- cGCGGcCGCGCGGCCCGGGGgAuGGUCg -3' miRNA:   3'- -UGCCcGCGCGCCGGGUUUUgUuCCGG- -5'
6349	3'	-59	NC_001847.1	+	33662	0.78	0.190648
	Target:  5'- cGCGuGGC-CGCGGCCCGc-GCGGGGCUa -3' miRNA:   3'- -UGC-CCGcGCGCCGGGUuuUGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	128813	0.78	0.176969
	Target:  5'- gGCGGGCGCGCaGGCgcgcaCAAAA-AGGGCCa -3' miRNA:   3'- -UGCCCGCGCG-CCGg----GUUUUgUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	125385	0.78	0.190648
	Target:  5'- aGCGGuaaGCGgGCGcCCCGGGGCAGGGCCc -3' miRNA:   3'- -UGCC---CGCgCGCcGGGUUUUGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	8479	0.78	0.172607
	Target:  5'- -gGGGCgGCGCucGGCCgGGGGCGGGGCCc -3' miRNA:   3'- ugCCCG-CGCG--CCGGgUUUUGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	26000	0.78	0.176969
	Target:  5'- gGCGGGCGCGCaGGCgcgcaCAAAA-AGGGCCa -3' miRNA:   3'- -UGCCCGCGCG-CCGg----GUUUUgUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	1144	0.78	0.176969
	Target:  5'- gGCGccucGGCGCGCGGCuCCGGcAGCGcGGCCg -3' miRNA:   3'- -UGC----CCGCGCGCCG-GGUU-UUGUuCCGG- -5'
6349	3'	-59	NC_001847.1	+	29454	0.77	0.215509
	Target:  5'- cGCGcGGCGCgGCGGCCCGc-GCGucGGCCu -3' miRNA:   3'- -UGC-CCGCG-CGCCGGGUuuUGUu-CCGG- -5'
6349	3'	-59	NC_001847.1	+	1531	0.77	0.220269
	Target:  5'- uCGGcGCGCGCGaaggcGCCCGGGccgaagacgcgccGCGAGGCCa -3' miRNA:   3'- uGCC-CGCGCGC-----CGGGUUU-------------UGUUCCGG- -5'
6349	3'	-59	NC_001847.1	+	54331	0.77	0.220269
	Target:  5'- uCGcGGCGCGCGGCCUucgccgccguaAAGGCGuguauaaAGGCCg -3' miRNA:   3'- uGC-CCGCGCGCCGGG-----------UUUUGU-------UCCGG- -5'
6349	3'	-59	NC_001847.1	+	61336	0.77	0.220803
	Target:  5'- gGCGGGCGCGCcuaGCCCAccGGCAGGcaGCCc -3' miRNA:   3'- -UGCCCGCGCGc--CGGGUu-UUGUUC--CGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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