miRNA display CGI


Results 41 - 60 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 54672 0.79 0.16417
Target:  5'- aACGGGgaGCGCGGCCCGAcGGCGGcGGCg -3'
miRNA:   3'- -UGCCCg-CGCGCCGGGUU-UUGUU-CCGg -5'
6349 3' -59 NC_001847.1 + 52519 0.78 0.168341
Target:  5'- cGCGGcCGCGCGGCCCGGGGgAuGGUCg -3'
miRNA:   3'- -UGCCcGCGCGCCGGGUUUUgUuCCGG- -5'
6349 3' -59 NC_001847.1 + 111292 0.78 0.172607
Target:  5'- -gGGGCgGCGCucGGCCgGGGGCGGGGCCc -3'
miRNA:   3'- ugCCCG-CGCG--CCGGgUUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 8479 0.78 0.172607
Target:  5'- -gGGGCgGCGCucGGCCgGGGGCGGGGCCc -3'
miRNA:   3'- ugCCCG-CGCG--CCGGgUUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 75271 0.78 0.176529
Target:  5'- cGCGGaggccgcGCGCGCGGCCCucGGCGAccgcgccuGGCCg -3'
miRNA:   3'- -UGCC-------CGCGCGCCGGGuuUUGUU--------CCGG- -5'
6349 3' -59 NC_001847.1 + 19191 0.78 0.176529
Target:  5'- gGCGGGgGCggggucuGUGGCCCAGAcgGCGAGuGCCg -3'
miRNA:   3'- -UGCCCgCG-------CGCCGGGUUU--UGUUC-CGG- -5'
6349 3' -59 NC_001847.1 + 103957 0.78 0.176969
Target:  5'- gGCGccucGGCGCGCGGCuCCGGcAGCGcGGCCg -3'
miRNA:   3'- -UGC----CCGCGCGCCG-GGUU-UUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 128813 0.78 0.176969
Target:  5'- gGCGGGCGCGCaGGCgcgcaCAAAA-AGGGCCa -3'
miRNA:   3'- -UGCCCGCGCG-CCGg----GUUUUgUUCCGG- -5'
6349 3' -59 NC_001847.1 + 26000 0.78 0.176969
Target:  5'- gGCGGGCGCGCaGGCgcgcaCAAAA-AGGGCCa -3'
miRNA:   3'- -UGCCCGCGCG-CCGg----GUUUUgUUCCGG- -5'
6349 3' -59 NC_001847.1 + 43578 0.78 0.176969
Target:  5'- cGCGGGCGaCGCGcGCCCcagcguGGCGcugGGGCCg -3'
miRNA:   3'- -UGCCCGC-GCGC-CGGGuu----UUGU---UCCGG- -5'
6349 3' -59 NC_001847.1 + 1144 0.78 0.176969
Target:  5'- gGCGccucGGCGCGCGGCuCCGGcAGCGcGGCCg -3'
miRNA:   3'- -UGC----CCGCGCGCCG-GGUU-UUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 68215 0.78 0.176969
Target:  5'- -gGGGCGCaCGGgCCGcgGCGGGGCCg -3'
miRNA:   3'- ugCCCGCGcGCCgGGUuuUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 26761 0.78 0.185988
Target:  5'- cGCGGGUGCGCGGCCUGGucaguGCGcGcGCCc -3'
miRNA:   3'- -UGCCCGCGCGCCGGGUUu----UGUuC-CGG- -5'
6349 3' -59 NC_001847.1 + 22572 0.78 0.190648
Target:  5'- aGCGGuaaGCGgGCGcCCCGGGGCAGGGCCc -3'
miRNA:   3'- -UGCC---CGCgCGCcGGGUUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 125385 0.78 0.190648
Target:  5'- aGCGGuaaGCGgGCGcCCCGGGGCAGGGCCc -3'
miRNA:   3'- -UGCC---CGCgCGCcGGGUUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 33662 0.78 0.190648
Target:  5'- cGCGuGGC-CGCGGCCCGc-GCGGGGCUa -3'
miRNA:   3'- -UGC-CCGcGCGCCGGGUuuUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 119556 0.77 0.19541
Target:  5'- -gGGGCGCGCGGCCaGAcucugcgggcAGCGGcGGCCg -3'
miRNA:   3'- ugCCCGCGCGCCGGgUU----------UUGUU-CCGG- -5'
6349 3' -59 NC_001847.1 + 33979 0.77 0.19541
Target:  5'- cCGGGCGCGCuGGCCgG--GCuGGGCCc -3'
miRNA:   3'- uGCCCGCGCG-CCGGgUuuUGuUCCGG- -5'
6349 3' -59 NC_001847.1 + 95519 0.77 0.200276
Target:  5'- gGCGGGCGCGCcaggcuuGCCCcuGGGGCuGGGGCCg -3'
miRNA:   3'- -UGCCCGCGCGc------CGGG--UUUUG-UUCCGG- -5'
6349 3' -59 NC_001847.1 + 82227 0.77 0.202251
Target:  5'- cGCGGGCGCcccgagccgcugcccGCGGaCCUAGGACu-GGCCa -3'
miRNA:   3'- -UGCCCGCG---------------CGCC-GGGUUUUGuuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.