miRNA display CGI


Results 61 - 80 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 103008 0.77 0.209811
Target:  5'- cGCGGGCGCgGCGgcGCCCAGcgccggcGGCGggcGGGCCg -3'
miRNA:   3'- -UGCCCGCG-CGC--CGGGUU-------UUGU---UCCGG- -5'
6349 3' -59 NC_001847.1 + 52914 0.77 0.209811
Target:  5'- cGCGGGCa-GCGGCUCGGGGCGcccgcgaAGGCCg -3'
miRNA:   3'- -UGCCCGcgCGCCGGGUUUUGU-------UCCGG- -5'
6349 3' -59 NC_001847.1 + 80198 0.77 0.210324
Target:  5'- uGCGGGCGgGUGcGCCgCGAAgcGCAGGGCg -3'
miRNA:   3'- -UGCCCGCgCGC-CGG-GUUU--UGUUCCGg -5'
6349 3' -59 NC_001847.1 + 132145 0.77 0.215509
Target:  5'- cGCGGuggagcGCGCGCGGCuCCAGcGCGcGGCCc -3'
miRNA:   3'- -UGCC------CGCGCGCCG-GGUUuUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 29454 0.77 0.215509
Target:  5'- cGCGcGGCGCgGCGGCCCGc-GCGucGGCCu -3'
miRNA:   3'- -UGC-CCGCG-CGCCGGGUuuUGUu-CCGG- -5'
6349 3' -59 NC_001847.1 + 29332 0.77 0.215509
Target:  5'- cGCGGuggagcGCGCGCGGCuCCAGcGCGcGGCCc -3'
miRNA:   3'- -UGCC------CGCGCGCCG-GGUUuUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 132267 0.77 0.215509
Target:  5'- cGCGcGGCGCgGCGGCCCGc-GCGucGGCCu -3'
miRNA:   3'- -UGC-CCGCG-CGCCGGGUuuUGUu-CCGG- -5'
6349 3' -59 NC_001847.1 + 95345 0.77 0.215509
Target:  5'- -aGGGgGCGCaGCCaggGGAGCGGGGCCa -3'
miRNA:   3'- ugCCCgCGCGcCGGg--UUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 1531 0.77 0.220269
Target:  5'- uCGGcGCGCGCGaaggcGCCCGGGccgaagacgcgccGCGAGGCCa -3'
miRNA:   3'- uGCC-CGCGCGC-----CGGGUUU-------------UGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 104344 0.77 0.220269
Target:  5'- uCGGcGCGCGCGaaggcGCCCGGGccgaagacgcgccGCGAGGCCa -3'
miRNA:   3'- uGCC-CGCGCGC-----CGGGUUU-------------UGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 54331 0.77 0.220269
Target:  5'- uCGcGGCGCGCGGCCUucgccgccguaAAGGCGuguauaaAGGCCg -3'
miRNA:   3'- uGC-CCGCGCGCCGGG-----------UUUUGU-------UCCGG- -5'
6349 3' -59 NC_001847.1 + 46920 0.77 0.220803
Target:  5'- -gGGGCGCGUcgGGCCCG-GGCuccGGGCCg -3'
miRNA:   3'- ugCCCGCGCG--CCGGGUuUUGu--UCCGG- -5'
6349 3' -59 NC_001847.1 + 61336 0.77 0.220803
Target:  5'- gGCGGGCGCGCcuaGCCCAccGGCAGGcaGCCc -3'
miRNA:   3'- -UGCCCGCGCGc--CGGGUu-UUGUUC--CGG- -5'
6349 3' -59 NC_001847.1 + 130184 0.76 0.226208
Target:  5'- cGCGGGCGCcCGGCCUgaaGAGAC-GGGCg -3'
miRNA:   3'- -UGCCCGCGcGCCGGG---UUUUGuUCCGg -5'
6349 3' -59 NC_001847.1 + 35327 0.76 0.226208
Target:  5'- aGCGGGCGUGC-GCCUGgagcugccGAGCGAGGCUc -3'
miRNA:   3'- -UGCCCGCGCGcCGGGU--------UUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 96922 0.76 0.231724
Target:  5'- cGCGuagaGGCGCGCGGCCCGGgccuccgcgggcGGCAGGcGCUc -3'
miRNA:   3'- -UGC----CCGCGCGCCGGGUU------------UUGUUC-CGG- -5'
6349 3' -59 NC_001847.1 + 47555 0.76 0.237353
Target:  5'- gGCGGGCGCggggagcccgGCGGCCgCGcacgcgccGAGgAAGGCCg -3'
miRNA:   3'- -UGCCCGCG----------CGCCGG-GU--------UUUgUUCCGG- -5'
6349 3' -59 NC_001847.1 + 87847 0.76 0.237353
Target:  5'- gGCGGGCGUGaUGGCCC---GCG-GGCCu -3'
miRNA:   3'- -UGCCCGCGC-GCCGGGuuuUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 18734 0.76 0.237353
Target:  5'- ---aGCGCGCGGCCCGGGGCccaGAGcGCCg -3'
miRNA:   3'- ugccCGCGCGCCGGGUUUUG---UUC-CGG- -5'
6349 3' -59 NC_001847.1 + 125486 0.76 0.242517
Target:  5'- gGCGGGCGCGaggacGCCCGgcugcucGAGCGgcGGGCCg -3'
miRNA:   3'- -UGCCCGCGCgc---CGGGU-------UUUGU--UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.