miRNA display CGI


Results 61 - 80 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 28736 0.66 0.75641
Target:  5'- cGCGGGCagcgucgccgcGCGCGuGCgugCCGAcGCG-GGCCu -3'
miRNA:   3'- -UGCCCG-----------CGCGC-CG---GGUUuUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 72773 0.66 0.75641
Target:  5'- uCGGGCgGCGCGGCgugCCuGGGCGAaauuucGGCg -3'
miRNA:   3'- uGCCCG-CGCGCCG---GGuUUUGUU------CCGg -5'
6349 3' -59 NC_001847.1 + 117333 0.66 0.75641
Target:  5'- gGCGGGgG-GCGGCCUcgcccccCGcGGCCg -3'
miRNA:   3'- -UGCCCgCgCGCCGGGuuuu---GUuCCGG- -5'
6349 3' -59 NC_001847.1 + 123520 0.66 0.75641
Target:  5'- -aGGGCuGcCGCgGGCUCGgcuaAGGcCAAGGCCg -3'
miRNA:   3'- ugCCCG-C-GCG-CCGGGU----UUU-GUUCCGG- -5'
6349 3' -59 NC_001847.1 + 46825 0.66 0.75641
Target:  5'- cGCGcGGCuaaaGCGCGcaaaagucgaccGCCCccgcggcGCAAGGCCa -3'
miRNA:   3'- -UGC-CCG----CGCGC------------CGGGuuu----UGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 132077 0.66 0.75641
Target:  5'- cCGGacGCGCugGCGGCgcacCCGGAGCGcgugcuccGGGCCg -3'
miRNA:   3'- uGCC--CGCG--CGCCG----GGUUUUGU--------UCCGG- -5'
6349 3' -59 NC_001847.1 + 44694 0.66 0.75641
Target:  5'- gAUGGGcCGCGCGGaCCGcgcGCuuauuuuGGCCu -3'
miRNA:   3'- -UGCCC-GCGCGCCgGGUuu-UGuu-----CCGG- -5'
6349 3' -59 NC_001847.1 + 119663 0.66 0.75641
Target:  5'- gGCGGGaggGCaacgGCGGCCCcccAGGACccgAAGGCg -3'
miRNA:   3'- -UGCCCg--CG----CGCCGGG---UUUUG---UUCCGg -5'
6349 3' -59 NC_001847.1 + 78088 0.66 0.75641
Target:  5'- cCGGGCG-GCGGCCgGGcuCGAuccGCCu -3'
miRNA:   3'- uGCCCGCgCGCCGGgUUuuGUUc--CGG- -5'
6349 3' -59 NC_001847.1 + 72673 0.66 0.75641
Target:  5'- cGCcGGCGacccCGGCCCu--GCuGAGGCCg -3'
miRNA:   3'- -UGcCCGCgc--GCCGGGuuuUG-UUCCGG- -5'
6349 3' -59 NC_001847.1 + 76933 0.66 0.75641
Target:  5'- gGCGGGCaGauCcGCCCGGAGCGccugcuGGCCg -3'
miRNA:   3'- -UGCCCG-CgcGcCGGGUUUUGUu-----CCGG- -5'
6349 3' -59 NC_001847.1 + 65614 0.66 0.75641
Target:  5'- uCGcGCGUGCuGCUCGGcGCAGGGCUu -3'
miRNA:   3'- uGCcCGCGCGcCGGGUUuUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 64029 0.66 0.75641
Target:  5'- gACGGGCuugccCGCGGUUCAcgccugggcgcuGGACGcccuGGCCg -3'
miRNA:   3'- -UGCCCGc----GCGCCGGGU------------UUUGUu---CCGG- -5'
6349 3' -59 NC_001847.1 + 50356 0.66 0.75641
Target:  5'- gACGacGGCgGCGCGGCCgacgcuaAGGACGGcGCCg -3'
miRNA:   3'- -UGC--CCG-CGCGCCGGg------UUUUGUUcCGG- -5'
6349 3' -59 NC_001847.1 + 33332 0.66 0.75641
Target:  5'- gACGGcCuCGCGGCCUggGuggcgcugcugcACGAGGCg -3'
miRNA:   3'- -UGCCcGcGCGCCGGGuuU------------UGUUCCGg -5'
6349 3' -59 NC_001847.1 + 9662 0.66 0.75641
Target:  5'- cCGGGCGUccuCGcGCCCGccGCGAGcuGCCg -3'
miRNA:   3'- uGCCCGCGc--GC-CGGGUuuUGUUC--CGG- -5'
6349 3' -59 NC_001847.1 + 40808 0.66 0.755463
Target:  5'- cGCGGugaggauGUGC-CGGCCCAGcAGCccGGCCu -3'
miRNA:   3'- -UGCC-------CGCGcGCCGGGUU-UUGuuCCGG- -5'
6349 3' -59 NC_001847.1 + 80458 0.66 0.754515
Target:  5'- cGCGGGCGcCGCcGCCgccguc-GGGCCg -3'
miRNA:   3'- -UGCCCGC-GCGcCGGguuuuguUCCGG- -5'
6349 3' -59 NC_001847.1 + 53319 0.66 0.754515
Target:  5'- gGCGGGCGacaggacgGCGcGCCCcgccgccuccGCGuAGGCCa -3'
miRNA:   3'- -UGCCCGCg-------CGC-CGGGuuu-------UGU-UCCGG- -5'
6349 3' -59 NC_001847.1 + 101871 0.66 0.753565
Target:  5'- cGCGGaggagcucgccuuuGCGCGCGGaCCGcgGCAgcggAGGCg -3'
miRNA:   3'- -UGCC--------------CGCGCGCCgGGUuuUGU----UCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.