miRNA display CGI


Results 61 - 80 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 7738 0.79 0.163758
Target:  5'- cGCGGGCGCggagGCGGCggCCAGGGCAAgcccgacGGCCg -3'
miRNA:   3'- -UGCCCGCG----CGCCG--GGUUUUGUU-------CCGG- -5'
6349 3' -59 NC_001847.1 + 7906 0.66 0.746892
Target:  5'- -gGGGCGCGCGGC---------GGCCg -3'
miRNA:   3'- ugCCCGCGCGCCGgguuuuguuCCGG- -5'
6349 3' -59 NC_001847.1 + 8074 0.66 0.775115
Target:  5'- aGCGGGgGgGCcuGUCCAccacGGCGAGGCg -3'
miRNA:   3'- -UGCCCgCgCGc-CGGGUu---UUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 8119 0.72 0.408124
Target:  5'- cGCaGGCGCGgGGCCCcaGGGGC-GGGCg -3'
miRNA:   3'- -UGcCCGCGCgCCGGG--UUUUGuUCCGg -5'
6349 3' -59 NC_001847.1 + 8132 0.73 0.383011
Target:  5'- -gGGGCGgGCGGgCCGAcgagccucGCGGGGCUg -3'
miRNA:   3'- ugCCCGCgCGCCgGGUUu-------UGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 8479 0.78 0.172607
Target:  5'- -gGGGCgGCGCucGGCCgGGGGCGGGGCCc -3'
miRNA:   3'- ugCCCG-CGCG--CCGGgUUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 8606 0.68 0.627517
Target:  5'- -gGGGCgGCGCucGGCCgGGGGCGGGGg- -3'
miRNA:   3'- ugCCCG-CGCG--CCGGgUUUUGUUCCgg -5'
6349 3' -59 NC_001847.1 + 9203 0.71 0.455819
Target:  5'- cAUGGGCGCcaGCgGGCCCAauAAaaaggagucgcggggGCGGGGCUg -3'
miRNA:   3'- -UGCCCGCG--CG-CCGGGU--UU---------------UGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 9662 0.66 0.75641
Target:  5'- cCGGGCGUccuCGcGCCCGccGCGAGcuGCCg -3'
miRNA:   3'- uGCCCGCGc--GC-CGGGUuuUGUUC--CGG- -5'
6349 3' -59 NC_001847.1 + 9814 0.68 0.617398
Target:  5'- cGCuGGCguucaGCGCGGCuCCGAAAacgccCAAGGCg -3'
miRNA:   3'- -UGcCCG-----CGCGCCG-GGUUUU-----GUUCCGg -5'
6349 3' -59 NC_001847.1 + 9954 0.68 0.637639
Target:  5'- cCGGGCGCcuuCuGCCCcgAGGACuGGGCCc -3'
miRNA:   3'- uGCCCGCGc--GcCGGG--UUUUGuUCCGG- -5'
6349 3' -59 NC_001847.1 + 10220 0.67 0.698002
Target:  5'- -aGGGCGCGCccgcugucGCCCccGGCGcgccugccGGGCCc -3'
miRNA:   3'- ugCCCGCGCGc-------CGGGuuUUGU--------UCCGG- -5'
6349 3' -59 NC_001847.1 + 10377 0.69 0.5972
Target:  5'- uCGGGU-CGCcGCUCGcgGCGGGGCCg -3'
miRNA:   3'- uGCCCGcGCGcCGGGUuuUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 10583 0.69 0.5972
Target:  5'- gGCGGcccccccgcGCGCGCGGgCCGGcGCc-GGCCc -3'
miRNA:   3'- -UGCC---------CGCGCGCCgGGUUuUGuuCCGG- -5'
6349 3' -59 NC_001847.1 + 10697 0.67 0.667949
Target:  5'- cGCGcccGgGCGCGGCCCGcgccGGcCAAGcGCCg -3'
miRNA:   3'- -UGCc--CgCGCGCCGGGU----UUuGUUC-CGG- -5'
6349 3' -59 NC_001847.1 + 10744 0.66 0.765821
Target:  5'- -gGGGgGCGgGGCCCc--GC--GGCCc -3'
miRNA:   3'- ugCCCgCGCgCCGGGuuuUGuuCCGG- -5'
6349 3' -59 NC_001847.1 + 10870 0.75 0.273561
Target:  5'- gGCGGGCGCGgGcGCCC-AGGCAGaccGCCu -3'
miRNA:   3'- -UGCCCGCGCgC-CGGGuUUUGUUc--CGG- -5'
6349 3' -59 NC_001847.1 + 11196 0.66 0.737275
Target:  5'- cGCGGGCGUGCGGaaaaaauuAGACAgccuuuacucgcGGGCg -3'
miRNA:   3'- -UGCCCGCGCGCCgggu----UUUGU------------UCCGg -5'
6349 3' -59 NC_001847.1 + 11307 0.66 0.775115
Target:  5'- gAUGGGCGC---GCCCGc--CGAGGCCn -3'
miRNA:   3'- -UGCCCGCGcgcCGGGUuuuGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 11329 0.73 0.3435
Target:  5'- gGCGGGCG-GCuGGCgCCGGAGCGGGaGCa -3'
miRNA:   3'- -UGCCCGCgCG-CCG-GGUUUUGUUC-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.