miRNA display CGI


Results 81 - 100 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 79933 0.66 0.752615
Target:  5'- gACGGacGCaaagacgGCGCGGgCCAGAACGAGcucgcggauauauuGCCa -3'
miRNA:   3'- -UGCC--CG-------CGCGCCgGGUUUUGUUC--------------CGG- -5'
6349 3' -59 NC_001847.1 + 7906 0.66 0.746892
Target:  5'- -gGGGCGCGCGGC---------GGCCg -3'
miRNA:   3'- ugCCCGCGCGCCGgguuuuguuCCGG- -5'
6349 3' -59 NC_001847.1 + 92785 0.66 0.746892
Target:  5'- cCGaGGCGC-UGGCCaccgAGGACGuGGCCg -3'
miRNA:   3'- uGC-CCGCGcGCCGGg---UUUUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 133094 0.66 0.746892
Target:  5'- uGCGgcGGCGCGUGGCCUGGAugucGCAGaucgcGGaCCc -3'
miRNA:   3'- -UGC--CCGCGCGCCGGGUUU----UGUU-----CC-GG- -5'
6349 3' -59 NC_001847.1 + 120704 0.66 0.746892
Target:  5'- cGCGGccGCGCGCucGGCgCCAAAcaGCGGaGCCc -3'
miRNA:   3'- -UGCC--CGCGCG--CCG-GGUUU--UGUUcCGG- -5'
6349 3' -59 NC_001847.1 + 33208 0.66 0.746892
Target:  5'- gGCGGcGCGgGUGGCUCG--GCuuGGcGCCg -3'
miRNA:   3'- -UGCC-CGCgCGCCGGGUuuUGu-UC-CGG- -5'
6349 3' -59 NC_001847.1 + 132217 0.66 0.746892
Target:  5'- gGCGGccGCGCugGCGGCgCGGAcCGuGGCCc -3'
miRNA:   3'- -UGCC--CGCG--CGCCGgGUUUuGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 116124 0.66 0.746892
Target:  5'- gGCGGGgucaCGCGCgaagaGGCCgAGGGCGccGCCc -3'
miRNA:   3'- -UGCCC----GCGCG-----CCGGgUUUUGUucCGG- -5'
6349 3' -59 NC_001847.1 + 58232 0.66 0.746892
Target:  5'- gGCGGGaCGUGCGcGC---GAGCucGGCCg -3'
miRNA:   3'- -UGCCC-GCGCGC-CGgguUUUGuuCCGG- -5'
6349 3' -59 NC_001847.1 + 123799 0.66 0.746892
Target:  5'- uGCGcGGCG-GCGGCagc-GGCAGGcGCCg -3'
miRNA:   3'- -UGC-CCGCgCGCCGgguuUUGUUC-CGG- -5'
6349 3' -59 NC_001847.1 + 29404 0.66 0.746892
Target:  5'- gGCGGccGCGCugGCGGCgCGGAcCGuGGCCc -3'
miRNA:   3'- -UGCC--CGCG--CGCCGgGUUUuGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 30281 0.66 0.746892
Target:  5'- uGCGgcGGCGCGUGGCCUGGAugucGCAGaucgcGGaCCc -3'
miRNA:   3'- -UGC--CCGCGCGCCGGGUUU----UGUU-----CC-GG- -5'
6349 3' -59 NC_001847.1 + 118125 0.66 0.746892
Target:  5'- -aGGGCgGCGaGGCCgucuGCGAGGCg -3'
miRNA:   3'- ugCCCG-CGCgCCGGguuuUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 76 0.66 0.746892
Target:  5'- gGCGGGCcCG-GGCCCGcu-CuGGGCUc -3'
miRNA:   3'- -UGCCCGcGCgCCGGGUuuuGuUCCGG- -5'
6349 3' -59 NC_001847.1 + 78234 0.66 0.746892
Target:  5'- cCGGGCGgGUucGCCCug---GAGGCCg -3'
miRNA:   3'- uGCCCGCgCGc-CGGGuuuugUUCCGG- -5'
6349 3' -59 NC_001847.1 + 89562 0.66 0.746892
Target:  5'- cGCGGGcCGCGUGaGCaCCAucuuGAACAGccccGCCu -3'
miRNA:   3'- -UGCCC-GCGCGC-CG-GGU----UUUGUUc---CGG- -5'
6349 3' -59 NC_001847.1 + 45231 0.66 0.746892
Target:  5'- cGCGGccuCGCGCGGCaCAAccuCGGGcGCCg -3'
miRNA:   3'- -UGCCc--GCGCGCCGgGUUuu-GUUC-CGG- -5'
6349 3' -59 NC_001847.1 + 48180 0.66 0.746892
Target:  5'- cAUGGGCGUGaacacgGGCUCGGGGCGcgcGGCg -3'
miRNA:   3'- -UGCCCGCGCg-----CCGGGUUUUGUu--CCGg -5'
6349 3' -59 NC_001847.1 + 73182 0.66 0.746892
Target:  5'- gACGcGGCgGCGgaguCGGCCCGc-GCG-GGCCg -3'
miRNA:   3'- -UGC-CCG-CGC----GCCGGGUuuUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 41272 0.66 0.746892
Target:  5'- uGCcGGCGCGCGGUCa---GCAGcGcGCCg -3'
miRNA:   3'- -UGcCCGCGCGCCGGguuuUGUU-C-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.