miRNA display CGI


Results 41 - 60 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 68618 0.66 0.765821
Target:  5'- aGCGGGC-CGgGGaCCgCAAGGCGGcGcGCCu -3'
miRNA:   3'- -UGCCCGcGCgCC-GG-GUUUUGUU-C-CGG- -5'
6349 3' -59 NC_001847.1 + 89839 0.66 0.765821
Target:  5'- aACGcGCGCcuGCGaccGCCgGcuGCAAGGCCg -3'
miRNA:   3'- -UGCcCGCG--CGC---CGGgUuuUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 97114 0.66 0.765821
Target:  5'- gGCGcGGCgGCGCGcGCCCAcAGCAcccGCg -3'
miRNA:   3'- -UGC-CCG-CGCGC-CGGGUuUUGUuc-CGg -5'
6349 3' -59 NC_001847.1 + 103559 0.66 0.765821
Target:  5'- cGCGGGCcCc---CCUAGGGCGAGGCCg -3'
miRNA:   3'- -UGCCCGcGcgccGGGUUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 130707 0.66 0.765821
Target:  5'- cGCGGaGUGCGCcgaGGCCgAGggGGCgGAGGCg -3'
miRNA:   3'- -UGCC-CGCGCG---CCGGgUU--UUG-UUCCGg -5'
6349 3' -59 NC_001847.1 + 86433 0.66 0.765821
Target:  5'- gGCGGcGCuGCGCGGCgCGGGcagcguGCAcguGGUCa -3'
miRNA:   3'- -UGCC-CG-CGCGCCGgGUUU------UGUu--CCGG- -5'
6349 3' -59 NC_001847.1 + 34547 0.66 0.765821
Target:  5'- cCGGGCGCuuGgGGCC----ACA-GGCCg -3'
miRNA:   3'- uGCCCGCG--CgCCGGguuuUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 84036 0.66 0.764885
Target:  5'- gACGGcgagcucGCGCGCGaGUcgCUAGAGCAGccGGCCc -3'
miRNA:   3'- -UGCC-------CGCGCGC-CG--GGUUUUGUU--CCGG- -5'
6349 3' -59 NC_001847.1 + 41386 0.66 0.763009
Target:  5'- nCGGGCcgccgccggcagccGCGCGGCCUccAGCu--GCCg -3'
miRNA:   3'- uGCCCG--------------CGCGCCGGGuuUUGuucCGG- -5'
6349 3' -59 NC_001847.1 + 110616 0.66 0.763009
Target:  5'- cACGGaaaucgugcaGCGCGCGaGCCCcGAcgcccacggcguguGCAAcuuGGCCa -3'
miRNA:   3'- -UGCC----------CGCGCGC-CGGGuUU--------------UGUU---CCGG- -5'
6349 3' -59 NC_001847.1 + 29264 0.66 0.75641
Target:  5'- cCGGacGCGCugGCGGCgcacCCGGAGCGcgugcuccGGGCCg -3'
miRNA:   3'- uGCC--CGCG--CGCCG----GGUUUUGU--------UCCGG- -5'
6349 3' -59 NC_001847.1 + 44694 0.66 0.75641
Target:  5'- gAUGGGcCGCGCGGaCCGcgcGCuuauuuuGGCCu -3'
miRNA:   3'- -UGCCC-GCGCGCCgGGUuu-UGuu-----CCGG- -5'
6349 3' -59 NC_001847.1 + 119663 0.66 0.75641
Target:  5'- gGCGGGaggGCaacgGCGGCCCcccAGGACccgAAGGCg -3'
miRNA:   3'- -UGCCCg--CG----CGCCGGG---UUUUG---UUCCGg -5'
6349 3' -59 NC_001847.1 + 132077 0.66 0.75641
Target:  5'- cCGGacGCGCugGCGGCgcacCCGGAGCGcgugcuccGGGCCg -3'
miRNA:   3'- uGCC--CGCG--CGCCG----GGUUUUGU--------UCCGG- -5'
6349 3' -59 NC_001847.1 + 78088 0.66 0.75641
Target:  5'- cCGGGCG-GCGGCCgGGcuCGAuccGCCu -3'
miRNA:   3'- uGCCCGCgCGCCGGgUUuuGUUc--CGG- -5'
6349 3' -59 NC_001847.1 + 30585 0.66 0.75641
Target:  5'- cGCGGuggaguaccucuGCGCGCGGCuggCCGcgGCGcGGCg -3'
miRNA:   3'- -UGCC------------CGCGCGCCG---GGUuuUGUuCCGg -5'
6349 3' -59 NC_001847.1 + 87578 0.66 0.75641
Target:  5'- gGCGcGUGCGCGGCC----GCcGGGCUc -3'
miRNA:   3'- -UGCcCGCGCGCCGGguuuUGuUCCGG- -5'
6349 3' -59 NC_001847.1 + 72773 0.66 0.75641
Target:  5'- uCGGGCgGCGCGGCgugCCuGGGCGAaauuucGGCg -3'
miRNA:   3'- uGCCCG-CGCGCCG---GGuUUUGUU------CCGg -5'
6349 3' -59 NC_001847.1 + 72673 0.66 0.75641
Target:  5'- cGCcGGCGacccCGGCCCu--GCuGAGGCCg -3'
miRNA:   3'- -UGcCCGCgc--GCCGGGuuuUG-UUCCGG- -5'
6349 3' -59 NC_001847.1 + 46825 0.66 0.75641
Target:  5'- cGCGcGGCuaaaGCGCGcaaaagucgaccGCCCccgcggcGCAAGGCCa -3'
miRNA:   3'- -UGC-CCG----CGCGC------------CGGGuuu----UGUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.