Results 41 - 60 of 1036 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6349 | 3' | -59 | NC_001847.1 | + | 83721 | 0.66 | 0.775115 |
Target: 5'- cGCGcGCGgGCGGCuCCGucuGCGccGCCg -3' miRNA: 3'- -UGCcCGCgCGCCG-GGUuu-UGUucCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 115037 | 0.66 | 0.775115 |
Target: 5'- -aGGGCG-GCGaGUCCGGGGCAGaGCUc -3' miRNA: 3'- ugCCCGCgCGC-CGGGUUUUGUUcCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 58479 | 0.66 | 0.775115 |
Target: 5'- aACGGGUcgaaaaagGCGCccuccccGCCCucGGGCAGGGCg -3' miRNA: 3'- -UGCCCG--------CGCGc------CGGGu-UUUGUUCCGg -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 74273 | 0.66 | 0.775115 |
Target: 5'- cCGGGCGCgGCcGCCCucgcgcuGGACGcccuGGcGCCg -3' miRNA: 3'- uGCCCGCG-CGcCGGGu------UUUGU----UC-CGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 82734 | 0.66 | 0.775115 |
Target: 5'- cGCGGGCccaGC-GCCUGGAGCAcGGCg -3' miRNA: 3'- -UGCCCGcg-CGcCGGGUUUUGUuCCGg -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 89839 | 0.66 | 0.765821 |
Target: 5'- aACGcGCGCcuGCGaccGCCgGcuGCAAGGCCg -3' miRNA: 3'- -UGCcCGCG--CGC---CGGgUuuUGUUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 68618 | 0.66 | 0.765821 |
Target: 5'- aGCGGGC-CGgGGaCCgCAAGGCGGcGcGCCu -3' miRNA: 3'- -UGCCCGcGCgCC-GG-GUUUUGUU-C-CGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 39864 | 0.66 | 0.765821 |
Target: 5'- cCGGuaGgcuucguccaCGCGGCCCGGGuCcAGGCCg -3' miRNA: 3'- uGCCcgC----------GCGCCGGGUUUuGuUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 46825 | 0.66 | 0.75641 |
Target: 5'- cGCGcGGCuaaaGCGCGcaaaagucgaccGCCCccgcggcGCAAGGCCa -3' miRNA: 3'- -UGC-CCG----CGCGC------------CGGGuuu----UGUUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 72673 | 0.66 | 0.75641 |
Target: 5'- cGCcGGCGacccCGGCCCu--GCuGAGGCCg -3' miRNA: 3'- -UGcCCGCgc--GCCGGGuuuUG-UUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 72773 | 0.66 | 0.75641 |
Target: 5'- uCGGGCgGCGCGGCgugCCuGGGCGAaauuucGGCg -3' miRNA: 3'- uGCCCG-CGCGCCG---GGuUUUGUU------CCGg -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 87578 | 0.66 | 0.75641 |
Target: 5'- gGCGcGUGCGCGGCC----GCcGGGCUc -3' miRNA: 3'- -UGCcCGCGCGCCGGguuuUGuUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 30585 | 0.66 | 0.75641 |
Target: 5'- cGCGGuggaguaccucuGCGCGCGGCuggCCGcgGCGcGGCg -3' miRNA: 3'- -UGCC------------CGCGCGCCG---GGUuuUGUuCCGg -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 52244 | 0.66 | 0.75641 |
Target: 5'- cCGGGCGcCGCGcGCCgCG--GCuuGGCUg -3' miRNA: 3'- uGCCCGC-GCGC-CGG-GUuuUGuuCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 86348 | 0.66 | 0.75641 |
Target: 5'- cGauGGCGCcgGCGaggcGCCCGcAGACGAGGCg -3' miRNA: 3'- -UgcCCGCG--CGC----CGGGU-UUUGUUCCGg -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 104239 | 0.66 | 0.75641 |
Target: 5'- cGCcGGCGCGCGcCUCAccGGGCugcGGCCg -3' miRNA: 3'- -UGcCCGCGCGCcGGGU--UUUGuu-CCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 41386 | 0.66 | 0.763009 |
Target: 5'- nCGGGCcgccgccggcagccGCGCGGCCUccAGCu--GCCg -3' miRNA: 3'- uGCCCG--------------CGCGCCGGGuuUUGuucCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 110616 | 0.66 | 0.763009 |
Target: 5'- cACGGaaaucgugcaGCGCGCGaGCCCcGAcgcccacggcguguGCAAcuuGGCCa -3' miRNA: 3'- -UGCC----------CGCGCGC-CGGGuUU--------------UGUU---CCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 746 | 0.66 | 0.765821 |
Target: 5'- cGCGGGCcCc---CCUAGGGCGAGGCCg -3' miRNA: 3'- -UGCCCGcGcgccGGGUUUUGUUCCGG- -5' |
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6349 | 3' | -59 | NC_001847.1 | + | 10744 | 0.66 | 0.765821 |
Target: 5'- -gGGGgGCGgGGCCCc--GC--GGCCc -3' miRNA: 3'- ugCCCgCGCgCCGGGuuuUGuuCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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