miRNA display CGI


Results 41 - 60 of 1036 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6349 3' -59 NC_001847.1 + 47641 0.66 0.775115
Target:  5'- gGCGGGCaCGUGcaagcaGCCgCcGAGCAcGGCCa -3'
miRNA:   3'- -UGCCCGcGCGC------CGG-GuUUUGUuCCGG- -5'
6349 3' -59 NC_001847.1 + 4389 0.66 0.775115
Target:  5'- cGCGcGCGcCGCGGCCCA-GGCGcuGUCc -3'
miRNA:   3'- -UGCcCGC-GCGCCGGGUuUUGUucCGG- -5'
6349 3' -59 NC_001847.1 + 8074 0.66 0.775115
Target:  5'- aGCGGGgGgGCcuGUCCAccacGGCGAGGCg -3'
miRNA:   3'- -UGCCCgCgCGc-CGGGUu---UUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 34106 0.66 0.774191
Target:  5'- gGCGGGUGCGCaaauugggaccccGGCCgCG--GCGGcGGCa -3'
miRNA:   3'- -UGCCCGCGCG-------------CCGG-GUuuUGUU-CCGg -5'
6349 3' -59 NC_001847.1 + 63807 0.66 0.774191
Target:  5'- gUGGGuUGgGUGGCCCu-GGCAgcuccacguccgcGGGCCc -3'
miRNA:   3'- uGCCC-GCgCGCCGGGuuUUGU-------------UCCGG- -5'
6349 3' -59 NC_001847.1 + 97114 0.66 0.765821
Target:  5'- gGCGcGGCgGCGCGcGCCCAcAGCAcccGCg -3'
miRNA:   3'- -UGC-CCG-CGCGC-CGGGUuUUGUuc-CGg -5'
6349 3' -59 NC_001847.1 + 116421 0.66 0.775115
Target:  5'- cCGGGcCGCGCgcuugGGCUCGAgGGCGguGGGCg -3'
miRNA:   3'- uGCCC-GCGCG-----CCGGGUU-UUGU--UCCGg -5'
6349 3' -59 NC_001847.1 + 68618 0.66 0.765821
Target:  5'- aGCGGGC-CGgGGaCCgCAAGGCGGcGcGCCu -3'
miRNA:   3'- -UGCCCGcGCgCC-GG-GUUUUGUU-C-CGG- -5'
6349 3' -59 NC_001847.1 + 39864 0.66 0.765821
Target:  5'- cCGGuaGgcuucguccaCGCGGCCCGGGuCcAGGCCg -3'
miRNA:   3'- uGCCcgC----------GCGCCGGGUUUuGuUCCGG- -5'
6349 3' -59 NC_001847.1 + 10744 0.66 0.765821
Target:  5'- -gGGGgGCGgGGCCCc--GC--GGCCc -3'
miRNA:   3'- ugCCCgCGCgCCGGGuuuUGuuCCGG- -5'
6349 3' -59 NC_001847.1 + 746 0.66 0.765821
Target:  5'- cGCGGGCcCc---CCUAGGGCGAGGCCg -3'
miRNA:   3'- -UGCCCGcGcgccGGGUUUUGUUCCGG- -5'
6349 3' -59 NC_001847.1 + 110616 0.66 0.763009
Target:  5'- cACGGaaaucgugcaGCGCGCGaGCCCcGAcgcccacggcguguGCAAcuuGGCCa -3'
miRNA:   3'- -UGCC----------CGCGCGC-CGGGuUU--------------UGUU---CCGG- -5'
6349 3' -59 NC_001847.1 + 41386 0.66 0.763009
Target:  5'- nCGGGCcgccgccggcagccGCGCGGCCUccAGCu--GCCg -3'
miRNA:   3'- uGCCCG--------------CGCGCCGGGuuUUGuucCGG- -5'
6349 3' -59 NC_001847.1 + 104239 0.66 0.75641
Target:  5'- cGCcGGCGCGCGcCUCAccGGGCugcGGCCg -3'
miRNA:   3'- -UGcCCGCGCGCcGGGU--UUUGuu-CCGG- -5'
6349 3' -59 NC_001847.1 + 86348 0.66 0.75641
Target:  5'- cGauGGCGCcgGCGaggcGCCCGcAGACGAGGCg -3'
miRNA:   3'- -UgcCCGCG--CGC----CGGGU-UUUGUUCCGg -5'
6349 3' -59 NC_001847.1 + 52244 0.66 0.75641
Target:  5'- cCGGGCGcCGCGcGCCgCG--GCuuGGCUg -3'
miRNA:   3'- uGCCCGC-GCGC-CGG-GUuuUGuuCCGG- -5'
6349 3' -59 NC_001847.1 + 30585 0.66 0.75641
Target:  5'- cGCGGuggaguaccucuGCGCGCGGCuggCCGcgGCGcGGCg -3'
miRNA:   3'- -UGCC------------CGCGCGCCG---GGUuuUGUuCCGg -5'
6349 3' -59 NC_001847.1 + 87578 0.66 0.75641
Target:  5'- gGCGcGUGCGCGGCC----GCcGGGCUc -3'
miRNA:   3'- -UGCcCGCGCGCCGGguuuUGuUCCGG- -5'
6349 3' -59 NC_001847.1 + 72773 0.66 0.75641
Target:  5'- uCGGGCgGCGCGGCgugCCuGGGCGAaauuucGGCg -3'
miRNA:   3'- uGCCCG-CGCGCCG---GGuUUUGUU------CCGg -5'
6349 3' -59 NC_001847.1 + 72673 0.66 0.75641
Target:  5'- cGCcGGCGacccCGGCCCu--GCuGAGGCCg -3'
miRNA:   3'- -UGcCCGCgc--GCCGGGuuuUG-UUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.