miRNA display CGI


Results 101 - 120 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 3354 0.66 0.585407
Target:  5'- cGAcGCuGCcGGcCGCCgcaauccgCGCGCCGaGCCg -3'
miRNA:   3'- cCU-CGuCGaCC-GCGGa-------GCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 100350 0.66 0.585407
Target:  5'- -cAGCGGCcgcgGGUcguaGCCgCGCGCCgcGGCCg -3'
miRNA:   3'- ccUCGUCGa---CCG----CGGaGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 32213 0.66 0.585407
Target:  5'- --cGCGGCcuUGGaCGCCguccaggCGCACgCGGCg -3'
miRNA:   3'- ccuCGUCG--ACC-GCGGa------GCGUG-GCCGg -5'
6350 5' -62.5 NC_001847.1 + 72060 0.66 0.584427
Target:  5'- -cGGCGGUUGGCGCgcagaagCUgCGC-CCGcGCCu -3'
miRNA:   3'- ccUCGUCGACCGCG-------GA-GCGuGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 50087 0.66 0.58149
Target:  5'- cGGGCgcggccaaGGCUGccGCGCCgggcggcguagaGCGCCGGCUg -3'
miRNA:   3'- cCUCG--------UCGAC--CGCGGag----------CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 54691 0.66 0.579533
Target:  5'- cGGcGGCGGC-GGCGCCcgcggggaggacgaCGCGCgGGUCc -3'
miRNA:   3'- -CC-UCGUCGaCCGCGGa-------------GCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 131160 0.66 0.579533
Target:  5'- cGGGGCcGCgcgcccgggcccccGGCGcCCUCGCcGCCGGagaCg -3'
miRNA:   3'- -CCUCGuCGa-------------CCGC-GGAGCG-UGGCCg--G- -5'
6350 5' -62.5 NC_001847.1 + 66148 0.66 0.579533
Target:  5'- aGGcGCAcguGCUGGacgugcucucggccgUGCC-CGCGCgGGCCg -3'
miRNA:   3'- -CCuCGU---CGACC---------------GCGGaGCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 28347 0.66 0.579533
Target:  5'- cGGGGCcGCgcgcccgggcccccGGCGcCCUCGCcGCCGGagaCg -3'
miRNA:   3'- -CCUCGuCGa-------------CCGC-GGAGCG-UGGCCg--G- -5'
6350 5' -62.5 NC_001847.1 + 48841 0.66 0.575624
Target:  5'- --cGCGGg-GGCGCCUCGgcCGCgCGGCg -3'
miRNA:   3'- ccuCGUCgaCCGCGGAGC--GUG-GCCGg -5'
6350 5' -62.5 NC_001847.1 + 36840 0.66 0.575624
Target:  5'- gGGGGCuGGCggacGUGCgCUCgGCGgCGGCCg -3'
miRNA:   3'- -CCUCG-UCGac--CGCG-GAG-CGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 57670 0.66 0.575624
Target:  5'- cGGGCcgGGCcgGGCGCC-CgGCGCCcGCCc -3'
miRNA:   3'- cCUCG--UCGa-CCGCGGaG-CGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 8334 0.66 0.575624
Target:  5'- cGAGUgcgaauucugGGaCUGGCGCCaa--GCCGGCCc -3'
miRNA:   3'- cCUCG----------UC-GACCGCGGagcgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 31704 0.66 0.575624
Target:  5'- gGGGGCgggGGgaGGCGCgggccgCGCGCCgcugcggagcGGCCg -3'
miRNA:   3'- -CCUCG---UCgaCCGCGga----GCGUGG----------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 83911 0.66 0.575624
Target:  5'- -uGGCacuGGCUGaGCGCuagauCUUGCACCacGGCCa -3'
miRNA:   3'- ccUCG---UCGAC-CGCG-----GAGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 120122 0.66 0.575624
Target:  5'- -cGGCGGCc-GCGgCUCGCG-CGGCCc -3'
miRNA:   3'- ccUCGUCGacCGCgGAGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 111147 0.66 0.575624
Target:  5'- cGAGUgcgaauucugGGaCUGGCGCCaa--GCCGGCCc -3'
miRNA:   3'- cCUCG----------UC-GACCGCGGagcgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 32988 0.66 0.575624
Target:  5'- cGGGGCGGgCagGGCGgC-CGgAgCGGCCg -3'
miRNA:   3'- -CCUCGUC-Ga-CCGCgGaGCgUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 58037 0.66 0.575624
Target:  5'- -aAGCAGCcc-CGCCgcuaccgCGCGCgGGCCg -3'
miRNA:   3'- ccUCGUCGaccGCGGa------GCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 72976 0.66 0.575624
Target:  5'- gGGAcGCGGac-GCGCCcgCGCgggaGCUGGCCg -3'
miRNA:   3'- -CCU-CGUCgacCGCGGa-GCG----UGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.