miRNA display CGI


Results 81 - 100 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 125301 0.66 0.592273
Target:  5'- uGGGGCaaGGCUGGCcguggcucauggcgGCggCGgGCCgGGCCg -3'
miRNA:   3'- -CCUCG--UCGACCG--------------CGgaGCgUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 18882 0.66 0.589329
Target:  5'- cGAGCGGCgccagaguccgcaGCGCCgCGUACC-GCCa -3'
miRNA:   3'- cCUCGUCGac-----------CGCGGaGCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 32213 0.66 0.585407
Target:  5'- --cGCGGCcuUGGaCGCCguccaggCGCACgCGGCg -3'
miRNA:   3'- ccuCGUCG--ACC-GCGGa------GCGUG-GCCGg -5'
6350 5' -62.5 NC_001847.1 + 88883 0.66 0.585407
Target:  5'- cGGcGGCGGC-GGCGgCUCcCGCCGGg- -3'
miRNA:   3'- -CC-UCGUCGaCCGCgGAGcGUGGCCgg -5'
6350 5' -62.5 NC_001847.1 + 105106 0.66 0.585407
Target:  5'- -cGGCGGCggGGcCGCCgggCgGCAUgGGCCc -3'
miRNA:   3'- ccUCGUCGa-CC-GCGGa--G-CGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 11585 0.66 0.585407
Target:  5'- -cGGCGGCcccGGCccaaGCCccguUCGCAgCGGCCu -3'
miRNA:   3'- ccUCGUCGa--CCG----CGG----AGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 3354 0.66 0.585407
Target:  5'- cGAcGCuGCcGGcCGCCgcaauccgCGCGCCGaGCCg -3'
miRNA:   3'- cCU-CGuCGaCC-GCGGa-------GCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 30928 0.66 0.585407
Target:  5'- cGGuGCGGCggaGGC-CUUCGCAUaaaCGGCg -3'
miRNA:   3'- -CCuCGUCGa--CCGcGGAGCGUG---GCCGg -5'
6350 5' -62.5 NC_001847.1 + 22085 0.66 0.585407
Target:  5'- --cGCAGacguGCGCCgacgCGCugCGGCUg -3'
miRNA:   3'- ccuCGUCgac-CGCGGa---GCGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 16716 0.66 0.585407
Target:  5'- aGGAGCcccacGGCGCCgagacCGCAggcgaCGGCCa -3'
miRNA:   3'- -CCUCGucga-CCGCGGa----GCGUg----GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 59545 0.66 0.585407
Target:  5'- -cGGCAGCUGGCuggugcuggGCCUggaGCacuuuuuuuuGCCGGCg -3'
miRNA:   3'- ccUCGUCGACCG---------CGGAg--CG----------UGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 62502 0.66 0.585407
Target:  5'- -uAGUAGUUGGCGCCcacaaagugCgGCACgGGCg -3'
miRNA:   3'- ccUCGUCGACCGCGGa--------G-CGUGgCCGg -5'
6350 5' -62.5 NC_001847.1 + 107701 0.66 0.585407
Target:  5'- --uGCGGUUGGCgGCgCUCGCggGCgGGCa -3'
miRNA:   3'- ccuCGUCGACCG-CG-GAGCG--UGgCCGg -5'
6350 5' -62.5 NC_001847.1 + 89510 0.66 0.585407
Target:  5'- -cGGCAGC-GcGCGCCgCGCugCcGCCg -3'
miRNA:   3'- ccUCGUCGaC-CGCGGaGCGugGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 128121 0.66 0.585407
Target:  5'- -uGGC-GCUGGCGCUggcggaUGCG-CGGCCg -3'
miRNA:   3'- ccUCGuCGACCGCGGa-----GCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 2293 0.66 0.585407
Target:  5'- -cGGCGGCggGGcCGCCgggCgGCAUgGGCCc -3'
miRNA:   3'- ccUCGUCGa-CC-GCGGa--G-CGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 69388 0.66 0.585407
Target:  5'- --cGCAGCUuGCGCC-CGCG--GGCCa -3'
miRNA:   3'- ccuCGUCGAcCGCGGaGCGUggCCGG- -5'
6350 5' -62.5 NC_001847.1 + 100350 0.66 0.585407
Target:  5'- -cAGCGGCcgcgGGUcguaGCCgCGCGCCgcGGCCg -3'
miRNA:   3'- ccUCGUCGa---CCG----CGGaGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 44718 0.66 0.585407
Target:  5'- aGGGUAGCgggaagGGCGCCgccUCGUgGCCcGCCa -3'
miRNA:   3'- cCUCGUCGa-----CCGCGG---AGCG-UGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 2502 0.66 0.585407
Target:  5'- aGAcGUcGCgagGGcCGCCUCGCGCUuugcugccgGGCCg -3'
miRNA:   3'- cCU-CGuCGa--CC-GCGGAGCGUGG---------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.