Results 61 - 80 of 879 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6350 | 5' | -62.5 | NC_001847.1 | + | 33107 | 0.66 | 0.59522 |
Target: 5'- cGGAGCAuggGCcgGGgGCCcCGUACCugcGGCg -3' miRNA: 3'- -CCUCGU---CGa-CCgCGGaGCGUGG---CCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 56841 | 0.66 | 0.59522 |
Target: 5'- gGGGGCGGCccaGCcgcccgagcaccGCCUCGCAgaGGCg -3' miRNA: 3'- -CCUCGUCGac-CG------------CGGAGCGUggCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 58567 | 0.66 | 0.59522 |
Target: 5'- -cGGCGGCgaagaucgGGgGCCggGcCGCCGGCUg -3' miRNA: 3'- ccUCGUCGa-------CCgCGGagC-GUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 60737 | 0.66 | 0.59522 |
Target: 5'- -cGGCGGCccGCGCgCgCGCGgCGGCCg -3' miRNA: 3'- ccUCGUCGacCGCG-GaGCGUgGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 68847 | 0.66 | 0.59522 |
Target: 5'- aGAGCucgGGCgcgaGGCGgCggcgUGCGCCgGGCCg -3' miRNA: 3'- cCUCG---UCGa---CCGCgGa---GCGUGG-CCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 113173 | 0.66 | 0.59522 |
Target: 5'- cGGGCGGCaaccGGCGCCgcggcccagCGC-CCGGaCg -3' miRNA: 3'- cCUCGUCGa---CCGCGGa--------GCGuGGCCgG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 74385 | 0.66 | 0.59522 |
Target: 5'- uGGcGCuggAGCUGGaaaacCGCCacCGCGCCGcGCCc -3' miRNA: 3'- -CCuCG---UCGACC-----GCGGa-GCGUGGC-CGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 95256 | 0.66 | 0.59522 |
Target: 5'- gGGGGC-GCgaucgggGGCGCgaUCggggGCGCCGGCa -3' miRNA: 3'- -CCUCGuCGa------CCGCGg-AG----CGUGGCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 88940 | 0.66 | 0.59522 |
Target: 5'- cGGccCGGC-GGCGgC-CGcCGCCGGCCg -3' miRNA: 3'- -CCucGUCGaCCGCgGaGC-GUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 28448 | 0.66 | 0.59522 |
Target: 5'- --cGCcGC-GGCGCCgCGCgACgGGCCg -3' miRNA: 3'- ccuCGuCGaCCGCGGaGCG-UGgCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 433 | 0.66 | 0.59522 |
Target: 5'- cGGGCGGCggcGGCGgCggcaGCAgCGGCg -3' miRNA: 3'- cCUCGUCGa--CCGCgGag--CGUgGCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 50833 | 0.66 | 0.59522 |
Target: 5'- gGGGGC-GCUGcccGCGCCgggggGCGCUGGUg -3' miRNA: 3'- -CCUCGuCGAC---CGCGGag---CGUGGCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 125582 | 0.66 | 0.59522 |
Target: 5'- cGGGCGGCgGGCuggacgGCUgcaGCGCUGGCg -3' miRNA: 3'- cCUCGUCGaCCG------CGGag-CGUGGCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 59903 | 0.66 | 0.59522 |
Target: 5'- aGGAG-GGC-GGCGCg-CGCGCgCGGCg -3' miRNA: 3'- -CCUCgUCGaCCGCGgaGCGUG-GCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 123764 | 0.66 | 0.59522 |
Target: 5'- -uAGCAGC-GGCccugaCUUGCAUUGGCCu -3' miRNA: 3'- ccUCGUCGaCCGcg---GAGCGUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 93140 | 0.66 | 0.59522 |
Target: 5'- cGGGCuGCcGGCGCCcccCGCGggaaaggCGGCCg -3' miRNA: 3'- cCUCGuCGaCCGCGGa--GCGUg------GCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 6291 | 0.66 | 0.594238 |
Target: 5'- -aGGCAGCggaccucGGCgaggucgGCCUCgauGCGCgCGGCCa -3' miRNA: 3'- ccUCGUCGa------CCG-------CGGAG---CGUG-GCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 41817 | 0.66 | 0.594238 |
Target: 5'- aGGAcGUGGCgcgggauugGcGCGCCUacacacgCGCGCgCGGCCu -3' miRNA: 3'- -CCU-CGUCGa--------C-CGCGGA-------GCGUG-GCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 125301 | 0.66 | 0.592273 |
Target: 5'- uGGGGCaaGGCUGGCcguggcucauggcgGCggCGgGCCgGGCCg -3' miRNA: 3'- -CCUCG--UCGACCG--------------CGgaGCgUGG-CCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 22488 | 0.66 | 0.592273 |
Target: 5'- uGGGGCaaGGCUGGCcguggcucauggcgGCggCGgGCCgGGCCg -3' miRNA: 3'- -CCUCG--UCGACCG--------------CGgaGCgUGG-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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