miRNA display CGI


Results 61 - 80 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 6856 0.69 0.410626
Target:  5'- gGGGGCGGCgcuugcuuUGGCccGCCUUGCGCUuuugcauuuGGCUc -3'
miRNA:   3'- -CCUCGUCG--------ACCG--CGGAGCGUGG---------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 6890 0.68 0.444908
Target:  5'- aGGAGCAGUgcgucGGCGag-CGCGCgCGcGCCc -3'
miRNA:   3'- -CCUCGUCGa----CCGCggaGCGUG-GC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 6963 0.69 0.402314
Target:  5'- gGGGucGCGGC-GGCGCUUcCGCccGCgGGCCg -3'
miRNA:   3'- -CCU--CGUCGaCCGCGGA-GCG--UGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 7297 0.68 0.49917
Target:  5'- cGAGCcGCUGGCGCggCGCcugAgCGGaCCg -3'
miRNA:   3'- cCUCGuCGACCGCGgaGCG---UgGCC-GG- -5'
6350 5' -62.5 NC_001847.1 + 7430 0.71 0.318252
Target:  5'- gGGGGgGGggGGCGUaCUUGCAgCGGCCc -3'
miRNA:   3'- -CCUCgUCgaCCGCG-GAGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 7814 0.8 0.081674
Target:  5'- -cGGCAGCcGGcCGCCUCgGCGCCGGUCg -3'
miRNA:   3'- ccUCGUCGaCC-GCGGAG-CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 8131 0.72 0.278271
Target:  5'- cGGGGCgGGCgGGCcgacgaGCCUCGCggggcugcuugGCUGGCCu -3'
miRNA:   3'- -CCUCG-UCGaCCG------CGGAGCG-----------UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 8226 0.79 0.095246
Target:  5'- -aAGCAGCU-GCGCCaCGCGCUGGCCu -3'
miRNA:   3'- ccUCGUCGAcCGCGGaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 8334 0.66 0.575624
Target:  5'- cGAGUgcgaauucugGGaCUGGCGCCaa--GCCGGCCc -3'
miRNA:   3'- cCUCG----------UC-GACCGCGGagcgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 8381 0.68 0.453727
Target:  5'- -cGGCAGCgugGGCGUCUgcCGCGuaGGCUa -3'
miRNA:   3'- ccUCGUCGa--CCGCGGA--GCGUggCCGG- -5'
6350 5' -62.5 NC_001847.1 + 8443 0.67 0.550381
Target:  5'- cGGAgGCGGCgccgggucggaggcGGCGCCgggccgggggCgGCGCuCGGCCg -3'
miRNA:   3'- -CCU-CGUCGa-------------CCGCGGa---------G-CGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 9612 0.74 0.220678
Target:  5'- gGGAcgaccGUAGCUGcGCccGCCgcCGCGCCGGCCc -3'
miRNA:   3'- -CCU-----CGUCGAC-CG--CGGa-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 9655 0.85 0.036394
Target:  5'- cGAGCAGCcgGGCGuCCUCGCGCCcGCCg -3'
miRNA:   3'- cCUCGUCGa-CCGC-GGAGCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 10097 0.66 0.605059
Target:  5'- gGGAGCacaAGCggcgGGgaaagcCGCCuUCGCGgcgagcgggcCCGGCCg -3'
miRNA:   3'- -CCUCG---UCGa---CC------GCGG-AGCGU----------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 10165 0.68 0.46264
Target:  5'- cGAGCAgGCcGGC-CCgcuGCGCCGGCUu -3'
miRNA:   3'- cCUCGU-CGaCCGcGGag-CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 10546 0.69 0.419042
Target:  5'- cGGGGacccgcgccCGGCcGGCGCCgggcccgGCGCCGGCg -3'
miRNA:   3'- -CCUC---------GUCGaCCGCGGag-----CGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 10679 0.71 0.329618
Target:  5'- gGGGGCucgcccuccggucGCgcccgGGCGCggccCGCGCCGGCCa -3'
miRNA:   3'- -CCUCGu------------CGa----CCGCGga--GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 10894 0.71 0.318252
Target:  5'- gGGAGCcggAGCuuUGGCcCgCUCGCucgGCCGGCCc -3'
miRNA:   3'- -CCUCG---UCG--ACCGcG-GAGCG---UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 10935 0.67 0.536927
Target:  5'- cGAGcCGGCUGGCGCg----GCUGGCCu -3'
miRNA:   3'- cCUC-GUCGACCGCGgagcgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 11331 0.81 0.064558
Target:  5'- cGGGCGGCUGGCGCCggagcgggagcacUCGUACgcgCGGCCg -3'
miRNA:   3'- cCUCGUCGACCGCGG-------------AGCGUG---GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.