miRNA display CGI


Results 61 - 80 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 106076 0.76 0.161283
Target:  5'- aGGGGC-GCcGGCGCCgCGCGgCCGGCg -3'
miRNA:   3'- -CCUCGuCGaCCGCGGaGCGU-GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 34691 0.76 0.161283
Target:  5'- aGGAGC-GCUGGCGCgaggacuugCGCGCCGcGCUg -3'
miRNA:   3'- -CCUCGuCGACCGCGga-------GCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 94221 0.76 0.161283
Target:  5'- cGGAGCucgcGGCggGGCGCC-CGCGCgGcGCCg -3'
miRNA:   3'- -CCUCG----UCGa-CCGCGGaGCGUGgC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 103010 0.76 0.161283
Target:  5'- cGGGcGCGGC-GGCGCC-CaGCGCCGGCg -3'
miRNA:   3'- -CCU-CGUCGaCCGCGGaG-CGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 86521 0.75 0.16938
Target:  5'- -cGGCGGCUgGGCGCCcgCGUGCUGGCg -3'
miRNA:   3'- ccUCGUCGA-CCGCGGa-GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 11969 0.75 0.16938
Target:  5'- uGGGCGGCUGaGCGCCgcCGCGCCGucuCCg -3'
miRNA:   3'- cCUCGUCGAC-CGCGGa-GCGUGGCc--GG- -5'
6350 5' -62.5 NC_001847.1 + 65435 0.75 0.173563
Target:  5'- aGGcGGCAGCcGcGCGCCgcggaccgaGCGCCGGCCc -3'
miRNA:   3'- -CC-UCGUCGaC-CGCGGag-------CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 74270 0.75 0.177839
Target:  5'- uGGGGCccGC-GcGCGCgCUCGCGCUGGCCu -3'
miRNA:   3'- -CCUCGu-CGaC-CGCG-GAGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 100622 0.75 0.177839
Target:  5'- cGGGCGGCgcaucgccGGCGCCgucCGCGUCGGCCu -3'
miRNA:   3'- cCUCGUCGa-------CCGCGGa--GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 13004 0.75 0.177839
Target:  5'- --cGC-GC-GGCGCCcugCGCGCCGGCCg -3'
miRNA:   3'- ccuCGuCGaCCGCGGa--GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 53718 0.75 0.182207
Target:  5'- gGGccGGCGGCUGGCGCUgUGCGCCuGCg -3'
miRNA:   3'- -CC--UCGUCGACCGCGGaGCGUGGcCGg -5'
6350 5' -62.5 NC_001847.1 + 116164 0.75 0.186671
Target:  5'- -uGGCGGCcgcgGGCGCCgcggcCGCGCUGGUCg -3'
miRNA:   3'- ccUCGUCGa---CCGCGGa----GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 31115 0.75 0.186671
Target:  5'- cGGGCggcgcgcgcuggAGCUGGCGCCcgacgaGCuGCCGGCCg -3'
miRNA:   3'- cCUCG------------UCGACCGCGGag----CG-UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 101902 0.75 0.186671
Target:  5'- -cGGCAGCggaGGCGCCgcggCGC-CCGGCg -3'
miRNA:   3'- ccUCGUCGa--CCGCGGa---GCGuGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 133928 0.75 0.186671
Target:  5'- cGGGCggcgcgcgcuggAGCUGGCGCCcgacgaGCuGCCGGCCg -3'
miRNA:   3'- cCUCG------------UCGACCGCGGag----CG-UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 53886 0.75 0.186671
Target:  5'- gGGGGCGGCgGGCcccccguCCUCGCGaCGGCCc -3'
miRNA:   3'- -CCUCGUCGaCCGc------GGAGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 99256 0.75 0.186671
Target:  5'- --cGCAGCcGGCGCgggaguauaUUUGCGCCGGCCc -3'
miRNA:   3'- ccuCGUCGaCCGCG---------GAGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 12041 0.75 0.186671
Target:  5'- cGGAGC-GCUGGaCGCCcugCGCGCUgcggacgccgaGGCCg -3'
miRNA:   3'- -CCUCGuCGACC-GCGGa--GCGUGG-----------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 86131 0.74 0.195887
Target:  5'- -uGGCAGauCUGGUauuuaaCCUCGCGCCGGCCc -3'
miRNA:   3'- ccUCGUC--GACCGc-----GGAGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 25525 0.74 0.195887
Target:  5'- aGGcGCGGUUGGCGC---GCACCGGCUc -3'
miRNA:   3'- -CCuCGUCGACCGCGgagCGUGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.