miRNA display CGI


Results 61 - 80 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 11969 0.75 0.16938
Target:  5'- uGGGCGGCUGaGCGCCgcCGCGCCGucuCCg -3'
miRNA:   3'- cCUCGUCGAC-CGCGGa-GCGUGGCc--GG- -5'
6350 5' -62.5 NC_001847.1 + 99256 0.75 0.186671
Target:  5'- --cGCAGCcGGCGCgggaguauaUUUGCGCCGGCCc -3'
miRNA:   3'- ccuCGUCGaCCGCG---------GAGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 11331 0.81 0.064558
Target:  5'- cGGGCGGCUGGCGCCggagcgggagcacUCGUACgcgCGGCCg -3'
miRNA:   3'- cCUCGUCGACCGCGG-------------AGCGUG---GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 7814 0.8 0.081674
Target:  5'- -cGGCAGCcGGcCGCCUCgGCGCCGGUCg -3'
miRNA:   3'- ccUCGUCGaCC-GCGGAG-CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 70374 0.79 0.092844
Target:  5'- gGGGGC-GCcggGGCGCgagCUCGCGCUGGCCa -3'
miRNA:   3'- -CCUCGuCGa--CCGCG---GAGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 105148 0.79 0.102809
Target:  5'- cGGGCAGC-GGCGgCUcccgcCGCGCCGGCCc -3'
miRNA:   3'- cCUCGUCGaCCGCgGA-----GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 105569 0.77 0.129017
Target:  5'- cGGcGCGGC-GGCGCCg-GCGCCGGCg -3'
miRNA:   3'- -CCuCGUCGaCCGCGGagCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 100837 0.76 0.146129
Target:  5'- cGGGCGGCUccGGCcaggGCCggaGCGCCGGCCc -3'
miRNA:   3'- cCUCGUCGA--CCG----CGGag-CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 132339 0.76 0.157367
Target:  5'- cGGcGCGGCUGGCGgC-CGCGCucgCGGCCc -3'
miRNA:   3'- -CCuCGUCGACCGCgGaGCGUG---GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 34691 0.76 0.161283
Target:  5'- aGGAGC-GCUGGCGCgaggacuugCGCGCCGcGCUg -3'
miRNA:   3'- -CCUCGuCGACCGCGga-------GCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 94254 0.73 0.253906
Target:  5'- uGGAGCGGCUcGCGCCcUGCGuccaCGGCUc -3'
miRNA:   3'- -CCUCGUCGAcCGCGGaGCGUg---GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 75922 0.73 0.253906
Target:  5'- cGAGCAcGCggUGGCGCCgccgUGCGCC-GCCa -3'
miRNA:   3'- cCUCGU-CG--ACCGCGGa---GCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 63419 0.74 0.195887
Target:  5'- gGGAGCGcacGC-GGCGCCggCGgGCCGGCg -3'
miRNA:   3'- -CCUCGU---CGaCCGCGGa-GCgUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 105953 0.74 0.205498
Target:  5'- gGGAGCccGGC-GGCGCCggcggCGCGgCgGGCCg -3'
miRNA:   3'- -CCUCG--UCGaCCGCGGa----GCGU-GgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 131231 0.74 0.210455
Target:  5'- cGGGCGcGCaaccGGCGCC-CGCGCUGGCUa -3'
miRNA:   3'- cCUCGU-CGa---CCGCGGaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 54118 0.74 0.220678
Target:  5'- --cGCGGgaGGCGCa--GCACCGGCUg -3'
miRNA:   3'- ccuCGUCgaCCGCGgagCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 30989 0.74 0.222773
Target:  5'- uGGAGCAGCgaagcGGCaccauguccggcguuGCCggcgcgcgCGCGCCGGCa -3'
miRNA:   3'- -CCUCGUCGa----CCG---------------CGGa-------GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 2751 0.73 0.231322
Target:  5'- gGGAGCgAGCgagGGCGCCUCGUcgucuucuuCgCGGUCa -3'
miRNA:   3'- -CCUCG-UCGa--CCGCGGAGCGu--------G-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 24327 0.73 0.236805
Target:  5'- cGAGCGGUgGcGCGCCacgcCGCGCgCGGCCu -3'
miRNA:   3'- cCUCGUCGaC-CGCGGa---GCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 14814 0.73 0.248096
Target:  5'- cGGAGCuGCgcGGCGCCcUGCGCgCGGUg -3'
miRNA:   3'- -CCUCGuCGa-CCGCGGaGCGUG-GCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.