miRNA display CGI


Results 41 - 60 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 94221 0.76 0.161283
Target:  5'- cGGAGCucgcGGCggGGCGCC-CGCGCgGcGCCg -3'
miRNA:   3'- -CCUCG----UCGa-CCGCGGaGCGUGgC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 17006 0.78 0.110935
Target:  5'- gGGAcGCAGC--GCGCCUCGCAgaCGGCCu -3'
miRNA:   3'- -CCU-CGUCGacCGCGGAGCGUg-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 74651 0.86 0.031065
Target:  5'- cGGGGCAGCUGcuGCGCCUgGaGCCGGCCg -3'
miRNA:   3'- -CCUCGUCGAC--CGCGGAgCgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 34118 0.76 0.161283
Target:  5'- cGGAGCcuGC-GGCGCCUgcCGCGgUGGCCg -3'
miRNA:   3'- -CCUCGu-CGaCCGCGGA--GCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 15537 0.87 0.026505
Target:  5'- cGGGCuGCUGGCGCCggugCGCGCgCGGCCg -3'
miRNA:   3'- cCUCGuCGACCGCGGa---GCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 54118 0.74 0.220678
Target:  5'- --cGCGGgaGGCGCa--GCACCGGCUg -3'
miRNA:   3'- ccuCGUCgaCCGCGgagCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 25185 0.82 0.063067
Target:  5'- aGGuAGCAGCUGGCcagcgaGCCcCGCGCgCGGCCg -3'
miRNA:   3'- -CC-UCGUCGACCG------CGGaGCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 131231 0.74 0.210455
Target:  5'- cGGGCGcGCaaccGGCGCC-CGCGCUGGCUa -3'
miRNA:   3'- cCUCGU-CGa---CCGCGGaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 131575 0.74 0.205498
Target:  5'- cGGAccuGCAGCUGGCgcGCCUgcUGCAgCGGCg -3'
miRNA:   3'- -CCU---CGUCGACCG--CGGA--GCGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 33879 0.74 0.200642
Target:  5'- --uGCAGgaGGCGCCgcCGCGCgUGGCCg -3'
miRNA:   3'- ccuCGUCgaCCGCGGa-GCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 133928 0.75 0.186671
Target:  5'- cGGGCggcgcgcgcuggAGCUGGCGCCcgacgaGCuGCCGGCCg -3'
miRNA:   3'- cCUCG------------UCGACCGCGGag----CG-UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 53718 0.75 0.182207
Target:  5'- gGGccGGCGGCUGGCGCUgUGCGCCuGCg -3'
miRNA:   3'- -CC--UCGUCGACCGCGGaGCGUGGcCGg -5'
6350 5' -62.5 NC_001847.1 + 11969 0.75 0.16938
Target:  5'- uGGGCGGCUGaGCGCCgcCGCGCCGucuCCg -3'
miRNA:   3'- cCUCGUCGAC-CGCGGa-GCGUGGCc--GG- -5'
6350 5' -62.5 NC_001847.1 + 34279 0.76 0.161283
Target:  5'- -cGGCGGCUgGGCGCCgCGCuCgCGGCCg -3'
miRNA:   3'- ccUCGUCGA-CCGCGGaGCGuG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 106126 0.76 0.157367
Target:  5'- --cGCGGCgcgGGCGCCgcugccgccgGCGCCGGCCu -3'
miRNA:   3'- ccuCGUCGa--CCGCGGag--------CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 77462 0.76 0.146129
Target:  5'- cGGGCuggGGCgGGCGCCgggCGC-CCGGCCc -3'
miRNA:   3'- cCUCG---UCGaCCGCGGa--GCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 131830 0.78 0.119659
Target:  5'- cGGcGGCAGC-GGCGCC-CGCGCCGcGCUc -3'
miRNA:   3'- -CC-UCGUCGaCCGCGGaGCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 84546 0.79 0.095246
Target:  5'- cGGGGCGGggcGuGCGCCUCGUACaCGGCCu -3'
miRNA:   3'- -CCUCGUCga-C-CGCGGAGCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 32744 0.79 0.0905
Target:  5'- cGGccGGCGGCUauuuucgcgggcGGCGCUUCGCgacgGCCGGCCg -3'
miRNA:   3'- -CC--UCGUCGA------------CCGCGGAGCG----UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 124576 0.8 0.0756
Target:  5'- gGGGGCcGCcGGCGCCgggcccgGCGCCGGCCg -3'
miRNA:   3'- -CCUCGuCGaCCGCGGag-----CGUGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.