miRNA display CGI


Results 41 - 60 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 29122 0.66 0.614916
Target:  5'- cGAGCGGCUGcGCGagCUggcggaccgcUGCGCCGucGCCu -3'
miRNA:   3'- cCUCGUCGAC-CGCg-GA----------GCGUGGC--CGG- -5'
6350 5' -62.5 NC_001847.1 + 53728 0.66 0.614916
Target:  5'- cGGGGCGGaucGGCGCgCggcguagCGCGgauCCGGCg -3'
miRNA:   3'- -CCUCGUCga-CCGCG-Ga------GCGU---GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 85669 0.66 0.614916
Target:  5'- -cGGCcguGCUGGCGCgCagGCGCUcGCCg -3'
miRNA:   3'- ccUCGu--CGACCGCG-GagCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 128181 0.66 0.614916
Target:  5'- cGGGCGGaa-GCGCCgccgcgacccCGCGCCuGGCCc -3'
miRNA:   3'- cCUCGUCgacCGCGGa---------GCGUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 38217 0.66 0.614916
Target:  5'- cGGAgGCccgGGCcGcGCGCCUC-UACgCGGCCg -3'
miRNA:   3'- -CCU-CG---UCGaC-CGCGGAGcGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 113940 0.66 0.605059
Target:  5'- cGGucGCGGC-GGCGUCUCcuacgcCGCCGGgCg -3'
miRNA:   3'- -CCu-CGUCGaCCGCGGAGc-----GUGGCCgG- -5'
6350 5' -62.5 NC_001847.1 + 53771 0.66 0.605059
Target:  5'- -aGGCGGCgagGGCGgCa-GCACCGcaGCCg -3'
miRNA:   3'- ccUCGUCGa--CCGCgGagCGUGGC--CGG- -5'
6350 5' -62.5 NC_001847.1 + 95256 0.66 0.59522
Target:  5'- gGGGGC-GCgaucgggGGCGCgaUCggggGCGCCGGCa -3'
miRNA:   3'- -CCUCGuCGa------CCGCGg-AG----CGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 88940 0.66 0.59522
Target:  5'- cGGccCGGC-GGCGgC-CGcCGCCGGCCg -3'
miRNA:   3'- -CCucGUCGaCCGCgGaGC-GUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 90860 0.66 0.604074
Target:  5'- cGGGGCcggGGCUGGUGUCgaggccggggccgUUGCccagucGCCGGCg -3'
miRNA:   3'- -CCUCG---UCGACCGCGG-------------AGCG------UGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 60706 0.66 0.605059
Target:  5'- -uGGUAGC-GGCGCC-CGUugUGGUa -3'
miRNA:   3'- ccUCGUCGaCCGCGGaGCGugGCCGg -5'
6350 5' -62.5 NC_001847.1 + 35954 0.66 0.605059
Target:  5'- uGGGcGCuGCUGGCGgCgcuGCugUGGCUc -3'
miRNA:   3'- -CCU-CGuCGACCGCgGag-CGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 44609 0.66 0.605059
Target:  5'- aGGGCcGCcagGGCGCCguucagcaugCGCGCCaGCUc -3'
miRNA:   3'- cCUCGuCGa--CCGCGGa---------GCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 49420 0.66 0.605059
Target:  5'- --cGCAGcCUGcCGCCgUGCACUGGCg -3'
miRNA:   3'- ccuCGUC-GACcGCGGaGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 62005 0.66 0.605059
Target:  5'- aGAGCGGCgcGGgGCC---CugCGGCCg -3'
miRNA:   3'- cCUCGUCGa-CCgCGGagcGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 97550 0.66 0.605059
Target:  5'- cGGGcCGGCccccGGcCGCCgcagcCGCAgCGGCCa -3'
miRNA:   3'- cCUC-GUCGa---CC-GCGGa----GCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 98560 0.66 0.605059
Target:  5'- aGAGCGGCgugccgucGGCGUCcagguaggCGCGCgGcGCCa -3'
miRNA:   3'- cCUCGUCGa-------CCGCGGa-------GCGUGgC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 124072 0.66 0.605059
Target:  5'- cGGGGUggaacaGGCaGGUgaacuGCCgcCGCugCGGCCa -3'
miRNA:   3'- -CCUCG------UCGaCCG-----CGGa-GCGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 29456 0.66 0.605059
Target:  5'- --cGCGGCgcGGCgGCCcgCGCGUCGGCCn -3'
miRNA:   3'- ccuCGUCGa-CCG-CGGa-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 46265 0.66 0.605059
Target:  5'- gGGAGCcGCcGcCGCCgccgcgCGCACCGcGUCu -3'
miRNA:   3'- -CCUCGuCGaCcGCGGa-----GCGUGGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.