miRNA display CGI


Results 41 - 60 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 3859 0.68 0.489913
Target:  5'- -cAGCAGCgGGC-CCUCcagcgGCGgCGGCCc -3'
miRNA:   3'- ccUCGUCGaCCGcGGAG-----CGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 3917 0.72 0.278271
Target:  5'- cGGGCgccGGUUGcGCGCC-CGCGCUGGCg -3'
miRNA:   3'- cCUCG---UCGAC-CGCGGaGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 3970 0.71 0.304462
Target:  5'- -cGGCGGCgagGGCGCCgggggccggGCGCgCGGCCc -3'
miRNA:   3'- ccUCGUCGa--CCGCGGag-------CGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 4211 0.71 0.30855
Target:  5'- -aGGCAGCcaaagcccugcgcGGUGCCggcgCGCGCCGGCa -3'
miRNA:   3'- ccUCGUCGa------------CCGCGGa---GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 4261 0.68 0.444908
Target:  5'- -cAGCAGCcagucggcuuUGGCgGCCacgaggcgCGCGCCGGCg -3'
miRNA:   3'- ccUCGUCG----------ACCG-CGGa-------GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 4337 0.68 0.46264
Target:  5'- -cGGCcGC-GGcCGCCUcCGCcCCGGCCg -3'
miRNA:   3'- ccUCGuCGaCC-GCGGA-GCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 4525 0.66 0.56588
Target:  5'- --cGCA-CgacGUGCCUCGCGgCGGCCg -3'
miRNA:   3'- ccuCGUcGac-CGCGGAGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 4630 0.69 0.436186
Target:  5'- cGGGCGGCccgccGGCGCUcgCGCGCCucaGCCc -3'
miRNA:   3'- cCUCGUCGa----CCGCGGa-GCGUGGc--CGG- -5'
6350 5' -62.5 NC_001847.1 + 4829 0.66 0.614916
Target:  5'- gGGGGCGGgUGG-GUCg---GCCGGCCg -3'
miRNA:   3'- -CCUCGUCgACCgCGGagcgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 4873 0.67 0.546526
Target:  5'- gGGGGCGGCgGGCagcggcaggGCCccCGCGCC-GCUg -3'
miRNA:   3'- -CCUCGUCGaCCG---------CGGa-GCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 4977 0.74 0.200642
Target:  5'- gGGGGCAGCUGGgGU---GCGgCGGCCg -3'
miRNA:   3'- -CCUCGUCGACCgCGgagCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 5000 0.67 0.536927
Target:  5'- --cGCAGCUGuauuGCGCCUCGC-CCucgcgcgcgagGGCg -3'
miRNA:   3'- ccuCGUCGAC----CGCGGAGCGuGG-----------CCGg -5'
6350 5' -62.5 NC_001847.1 + 5425 0.7 0.373295
Target:  5'- aGGAGCgcgguuAGCcGcGCGUCUCGCuccacaagcgcgucCCGGCCg -3'
miRNA:   3'- -CCUCG------UCGaC-CGCGGAGCGu-------------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 5661 0.68 0.444908
Target:  5'- -cAGCGGaUGcGCGCCgUCGCGCgCGGCg -3'
miRNA:   3'- ccUCGUCgAC-CGCGG-AGCGUG-GCCGg -5'
6350 5' -62.5 NC_001847.1 + 5776 0.68 0.452841
Target:  5'- aGGAGCGGCUgucGGgGCUcauUUGCAUgaaagcaUGGCCg -3'
miRNA:   3'- -CCUCGUCGA---CCgCGG---AGCGUG-------GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 5833 0.68 0.453727
Target:  5'- --cGCccGGCaGGCccGCCUUGCACCaGGCCc -3'
miRNA:   3'- ccuCG--UCGaCCG--CGGAGCGUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 5893 0.66 0.585407
Target:  5'- aGGGCGGCc-GCGCCgUCGCAgauugugcgcCCgGGCCc -3'
miRNA:   3'- cCUCGUCGacCGCGG-AGCGU----------GG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 6117 0.67 0.507568
Target:  5'- aGGcGCGGCgcgaGCGCCUCGcCGCCaucggggGGCUc -3'
miRNA:   3'- -CCuCGUCGac--CGCGGAGC-GUGG-------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 6291 0.66 0.594238
Target:  5'- -aGGCAGCggaccucGGCgaggucgGCCUCgauGCGCgCGGCCa -3'
miRNA:   3'- ccUCGUCGa------CCG-------CGGAG---CGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 6687 0.68 0.49917
Target:  5'- -cGGCGGCcggccgGGCGCg-CGCGCagGGCCg -3'
miRNA:   3'- ccUCGUCGa-----CCGCGgaGCGUGg-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.