miRNA display CGI


Results 21 - 40 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 2335 0.79 0.102809
Target:  5'- cGGGCAGC-GGCGgCUcccgcCGCGCCGGCCc -3'
miRNA:   3'- cCUCGUCGaCCGCgGA-----GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 2473 0.68 0.480736
Target:  5'- cGGGCGGC-GGCGCC-CcCGCC-GCCg -3'
miRNA:   3'- cCUCGUCGaCCGCGGaGcGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 2502 0.66 0.585407
Target:  5'- aGAcGUcGCgagGGcCGCCUCGCGCUuugcugccgGGCCg -3'
miRNA:   3'- cCU-CGuCGa--CC-GCGGAGCGUGG---------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 2561 0.68 0.479823
Target:  5'- cGGGCugucuucGGCgcgGGCGCCU-GCG-CGGCCg -3'
miRNA:   3'- cCUCG-------UCGa--CCGCGGAgCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 2648 0.68 0.489913
Target:  5'- --cGCcGCUugcGGCGCCuUCGC-CCGGCg -3'
miRNA:   3'- ccuCGuCGA---CCGCGG-AGCGuGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 2751 0.73 0.231322
Target:  5'- gGGAGCgAGCgagGGCGCCUCGUcgucuucuuCgCGGUCa -3'
miRNA:   3'- -CCUCG-UCGa--CCGCGGAGCGu--------G-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 2756 0.77 0.129017
Target:  5'- cGGcGCGGC-GGCGCCg-GCGCCGGCg -3'
miRNA:   3'- -CCuCGUCGaCCGCGGagCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 2806 0.68 0.444908
Target:  5'- cGAGC-GC-GGcCGCCagcCGCGCCGGCa -3'
miRNA:   3'- cCUCGuCGaCC-GCGGa--GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 2987 0.69 0.426707
Target:  5'- cGGGGCcggcGCUGGaGCCgcgCGCGCUccaccgcgucgcgGGCCg -3'
miRNA:   3'- -CCUCGu---CGACCgCGGa--GCGUGG-------------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 3053 0.71 0.339807
Target:  5'- cGGAGCAcGCgcuccggGuGCGCCgccagCGCGuCCGGCg -3'
miRNA:   3'- -CCUCGU-CGa------C-CGCGGa----GCGU-GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 3140 0.74 0.205498
Target:  5'- gGGAGCccGGC-GGCGCCggcggCGCGgCgGGCCg -3'
miRNA:   3'- -CCUCG--UCGaCCGCGGa----GCGU-GgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 3263 0.76 0.161283
Target:  5'- aGGGGC-GCcGGCGCCgCGCGgCCGGCg -3'
miRNA:   3'- -CCUCGuCGaCCGCGGaGCGU-GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 3313 0.76 0.157367
Target:  5'- --cGCGGCgcgGGCGCCgcugccgccgGCGCCGGCCu -3'
miRNA:   3'- ccuCGUCGa--CCGCGGag--------CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 3354 0.66 0.585407
Target:  5'- cGAcGCuGCcGGcCGCCgcaauccgCGCGCCGaGCCg -3'
miRNA:   3'- cCU-CGuCGaCC-GCGGa-------GCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 3416 0.72 0.291136
Target:  5'- aGAGCAGCccgggGGCGCCagGCGCa-GCCc -3'
miRNA:   3'- cCUCGUCGa----CCGCGGagCGUGgcCGG- -5'
6350 5' -62.5 NC_001847.1 + 3496 0.7 0.347223
Target:  5'- cGGcGGCAGC-GGCGCCgucaCGCucCCGGUg -3'
miRNA:   3'- -CC-UCGUCGaCCGCGGa---GCGu-GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 3711 0.69 0.410626
Target:  5'- aGGcGCGGCaauCGCg-CGCGCCGGCCa -3'
miRNA:   3'- -CCuCGUCGaccGCGgaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 3756 0.68 0.453727
Target:  5'- cGGGGCAGUcccagaGGC-CCUCGCGggugucgcCCGcGCCg -3'
miRNA:   3'- -CCUCGUCGa-----CCGcGGAGCGU--------GGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 3813 0.69 0.410626
Target:  5'- cGGGCGGC-GGCGgCgCGCuGCCgGGCCa -3'
miRNA:   3'- cCUCGUCGaCCGCgGaGCG-UGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 3817 0.68 0.49917
Target:  5'- cGGGGCgucggccgcgAGCgUGGCGUugUUCGCGCC-GCCc -3'
miRNA:   3'- -CCUCG----------UCG-ACCGCG--GAGCGUGGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.