miRNA display CGI


Results 21 - 40 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 132830 0.67 0.556178
Target:  5'- --cGCAGCgGGCGUgUCGCcAUgGGCa -3'
miRNA:   3'- ccuCGUCGaCCGCGgAGCG-UGgCCGg -5'
6350 5' -62.5 NC_001847.1 + 132703 0.67 0.51414
Target:  5'- gGGAGCucgcugcGGCUGGCGCgaagcuuggcgaagCggCGCAgCGaGCCa -3'
miRNA:   3'- -CCUCG-------UCGACCGCG--------------Ga-GCGUgGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 132697 0.68 0.480736
Target:  5'- cGGGGaCGGCgaGGCGgCg-GCccuGCCGGCCg -3'
miRNA:   3'- -CCUC-GUCGa-CCGCgGagCG---UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 132571 0.69 0.427563
Target:  5'- -cGGCGGCcgcgcaGGCGCC-CGCGCCGaagacagcccGCCg -3'
miRNA:   3'- ccUCGUCGa-----CCGCGGaGCGUGGC----------CGG- -5'
6350 5' -62.5 NC_001847.1 + 132383 0.78 0.116682
Target:  5'- gGGGGCgccGGCgccGGCGCCgcCGCGCCgGGCCg -3'
miRNA:   3'- -CCUCG---UCGa--CCGCGGa-GCGUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 132339 0.76 0.157367
Target:  5'- cGGcGCGGCUGGCGgC-CGCGCucgCGGCCc -3'
miRNA:   3'- -CCuCGUCGACCGCgGaGCGUG---GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 132296 0.68 0.444908
Target:  5'- uGGGC-GCUGGCGCgCgCGCuguucagcccGCCGGCg -3'
miRNA:   3'- cCUCGuCGACCGCG-GaGCG----------UGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 132269 0.66 0.605059
Target:  5'- --cGCGGCgcGGCgGCCcgCGCGUCGGCCn -3'
miRNA:   3'- ccuCGUCGa-CCG-CGGa-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 132172 0.67 0.517911
Target:  5'- --cGCGGCcccggcGGCGCUgCGCGCCgaggcGGCCg -3'
miRNA:   3'- ccuCGUCGa-----CCGCGGaGCGUGG-----CCGG- -5'
6350 5' -62.5 NC_001847.1 + 132064 0.71 0.325321
Target:  5'- --cGCGGcCUGcGCGCCggaCGCGCUGGCg -3'
miRNA:   3'- ccuCGUC-GAC-CGCGGa--GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 131935 0.66 0.614916
Target:  5'- cGAGCGGCUGcGCGagCUggcggaccgcUGCGCCGucGCCu -3'
miRNA:   3'- cCUCGUCGAC-CGCg-GA----------GCGUGGC--CGG- -5'
6350 5' -62.5 NC_001847.1 + 131925 0.66 0.605059
Target:  5'- --cGCGGC-GGCGCggaggcacgUGCGCCGGCg -3'
miRNA:   3'- ccuCGUCGaCCGCGga-------GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 131887 0.68 0.46264
Target:  5'- --cGCGGCgccGGCGCCccUGcCGCCGGCg -3'
miRNA:   3'- ccuCGUCGa--CCGCGGa-GC-GUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 131857 0.71 0.325321
Target:  5'- --cGCcgAGCUGcGCGCCgugCuCGCCGGCCg -3'
miRNA:   3'- ccuCG--UCGAC-CGCGGa--GcGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 131830 0.78 0.119659
Target:  5'- cGGcGGCAGC-GGCGCC-CGCGCCGcGCUc -3'
miRNA:   3'- -CC-UCGUCGaCCGCGGaGCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 131775 0.71 0.332506
Target:  5'- --cGCGGCUcGGCGCgcggaUUGCGgCGGCCg -3'
miRNA:   3'- ccuCGUCGA-CCGCGg----AGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 131646 0.7 0.386016
Target:  5'- gGGAGC-GUgacGGCGCCgcugC-CGCCGGUCg -3'
miRNA:   3'- -CCUCGuCGa--CCGCGGa---GcGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 131575 0.74 0.205498
Target:  5'- cGGAccuGCAGCUGGCgcGCCUgcUGCAgCGGCg -3'
miRNA:   3'- -CCU---CGUCGACCG--CGGA--GCGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 131422 0.71 0.332506
Target:  5'- -aGGCGGCcGcGCGCUaCGCGgCGGCCg -3'
miRNA:   3'- ccUCGUCGaC-CGCGGaGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 131333 0.7 0.386016
Target:  5'- -cGGCAGC--GCGCCgccgcCGC-CCGGCCg -3'
miRNA:   3'- ccUCGUCGacCGCGGa----GCGuGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.