miRNA display CGI


Results 1 - 20 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 134847 0.72 0.259828
Target:  5'- cGGGGC-GCggggacGGCGCC-CGCGCgGGCUc -3'
miRNA:   3'- -CCUCGuCGa-----CCGCGGaGCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 134517 0.66 0.575624
Target:  5'- gGGGGCgggGGgaGGCGCgggccgCGCGCCgcugcggagcGGCCg -3'
miRNA:   3'- -CCUCG---UCgaCCGCGga----GCGUGG----------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 134362 0.69 0.436186
Target:  5'- cGGAcGacgacgaGGCcGGCGCCgccggcggCGgGCCGGCCu -3'
miRNA:   3'- -CCU-Cg------UCGaCCGCGGa-------GCgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 134242 0.72 0.291136
Target:  5'- cGGGCGGCggccGGCGgC-CGCGgCGGCCc -3'
miRNA:   3'- cCUCGUCGa---CCGCgGaGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 134192 0.7 0.386016
Target:  5'- cGGcGCAGCgugGaGCGgCgCGCGCgGGCCg -3'
miRNA:   3'- -CCuCGUCGa--C-CGCgGaGCGUGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 134154 0.72 0.284646
Target:  5'- gGGGGCAGaaGGUGCgUgCGgGCCGGCg -3'
miRNA:   3'- -CCUCGUCgaCCGCGgA-GCgUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 134075 0.72 0.291136
Target:  5'- gGGAGCAGCgaacagcccGGCGCCgcCGCuugcuCUGGCg -3'
miRNA:   3'- -CCUCGUCGa--------CCGCGGa-GCGu----GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 134035 0.68 0.502895
Target:  5'- uGGAggccGCGGC-GGCGCCgcccgcggccgcggCGC-CCGGCg -3'
miRNA:   3'- -CCU----CGUCGaCCGCGGa-------------GCGuGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 133959 0.68 0.444908
Target:  5'- cGGAGCuauAGCgagauaaGGCGCCggggcugggagCGCGCgCGGCa -3'
miRNA:   3'- -CCUCG---UCGa------CCGCGGa----------GCGUG-GCCGg -5'
6350 5' -62.5 NC_001847.1 + 133928 0.75 0.186671
Target:  5'- cGGGCggcgcgcgcuggAGCUGGCGCCcgacgaGCuGCCGGCCg -3'
miRNA:   3'- cCUCG------------UCGACCGCGGag----CG-UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 133887 0.71 0.304462
Target:  5'- -uGGgGGCUcGGCGCgC-CGCugCGGCCg -3'
miRNA:   3'- ccUCgUCGA-CCGCG-GaGCGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 133649 0.71 0.325321
Target:  5'- --cGCGGCUcuaccccgaGGCGCCgcCGCugCGGCUc -3'
miRNA:   3'- ccuCGUCGA---------CCGCGGa-GCGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 133598 0.7 0.381212
Target:  5'- --cGCGGCgcgucuucggcccgGGCGCCUucgcgCGCGCCgaGGCCg -3'
miRNA:   3'- ccuCGUCGa-------------CCGCGGA-----GCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 133565 0.74 0.205498
Target:  5'- cGAGCGgcgcGCUGGCGCgCgcCGUGCUGGCCu -3'
miRNA:   3'- cCUCGU----CGACCGCG-Ga-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 133540 0.74 0.205498
Target:  5'- cGGcGCAGU--GCGCCgCGCGCUGGCCc -3'
miRNA:   3'- -CCuCGUCGacCGCGGaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 133418 0.69 0.394111
Target:  5'- --cGCGGCUGGcCGCggCGCGgCGGCg -3'
miRNA:   3'- ccuCGUCGACC-GCGgaGCGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 133276 0.68 0.453727
Target:  5'- cGGcuGCuGCUGaGCGCCgacUCGCACgccugGGCCg -3'
miRNA:   3'- -CCu-CGuCGAC-CGCGG---AGCGUGg----CCGG- -5'
6350 5' -62.5 NC_001847.1 + 133204 0.81 0.073673
Target:  5'- uGGAGgAGCUcuGCGCCgCGCGCCGGCUa -3'
miRNA:   3'- -CCUCgUCGAc-CGCGGaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 133173 0.67 0.515082
Target:  5'- cGGGGaGGCgcuggcGGCGCCgcccggcgaggacgaGCGCCGGCg -3'
miRNA:   3'- -CCUCgUCGa-----CCGCGGag-------------CGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 132996 0.69 0.431
Target:  5'- cGAGCc-CUGGCGCCcggcgcUCGCcuucgaccccgaggcGCUGGCCg -3'
miRNA:   3'- cCUCGucGACCGCGG------AGCG---------------UGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.