miRNA display CGI


Results 1 - 20 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 46442 0.66 0.615903
Target:  5'- cGGGcGCGGCgguggGGaugcgcgcgcggaugGCCUUGCGCaUGGCCa -3'
miRNA:   3'- -CCU-CGUCGa----CCg--------------CGGAGCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 101027 0.66 0.609
Target:  5'- --cGCGGCaGGCGCCgcaggcuccgccgcCGCGCgagccacggCGGCCg -3'
miRNA:   3'- ccuCGUCGaCCGCGGa-------------GCGUG---------GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 131925 0.66 0.605059
Target:  5'- --cGCGGC-GGCGCggaggcacgUGCGCCGGCg -3'
miRNA:   3'- ccuCGUCGaCCGCGga-------GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 113940 0.66 0.605059
Target:  5'- cGGucGCGGC-GGCGUCUCcuacgcCGCCGGgCg -3'
miRNA:   3'- -CCu-CGUCGaCCGCGGAGc-----GUGGCCgG- -5'
6350 5' -62.5 NC_001847.1 + 53771 0.66 0.605059
Target:  5'- -aGGCGGCgagGGCGgCa-GCACCGcaGCCg -3'
miRNA:   3'- ccUCGUCGa--CCGCgGagCGUGGC--CGG- -5'
6350 5' -62.5 NC_001847.1 + 46265 0.66 0.605059
Target:  5'- gGGAGCcGCcGcCGCCgccgcgCGCACCGcGUCu -3'
miRNA:   3'- -CCUCGuCGaCcGCGGa-----GCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 29456 0.66 0.605059
Target:  5'- --cGCGGCgcGGCgGCCcgCGCGUCGGCCn -3'
miRNA:   3'- ccuCGUCGa-CCG-CGGa-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 124072 0.66 0.605059
Target:  5'- cGGGGUggaacaGGCaGGUgaacuGCCgcCGCugCGGCCa -3'
miRNA:   3'- -CCUCG------UCGaCCG-----CGGa-GCGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 98560 0.66 0.605059
Target:  5'- aGAGCGGCgugccgucGGCGUCcagguaggCGCGCgGcGCCa -3'
miRNA:   3'- cCUCGUCGa-------CCGCGGa-------GCGUGgC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 4829 0.66 0.614916
Target:  5'- gGGGGCGGgUGG-GUCg---GCCGGCCg -3'
miRNA:   3'- -CCUCGUCgACCgCGGagcgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 33376 0.66 0.614916
Target:  5'- -cAGCAGUcuGCGCCUCcUGgCGGCCg -3'
miRNA:   3'- ccUCGUCGacCGCGGAGcGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 52266 0.66 0.614916
Target:  5'- -uGGCuGCgGcGCGCC-CGCACgGGCg -3'
miRNA:   3'- ccUCGuCGaC-CGCGGaGCGUGgCCGg -5'
6350 5' -62.5 NC_001847.1 + 38217 0.66 0.614916
Target:  5'- cGGAgGCccgGGCcGcGCGCCUC-UACgCGGCCg -3'
miRNA:   3'- -CCU-CG---UCGaC-CGCGGAGcGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 128181 0.66 0.614916
Target:  5'- cGGGCGGaa-GCGCCgccgcgacccCGCGCCuGGCCc -3'
miRNA:   3'- cCUCGUCgacCGCGGa---------GCGUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 85669 0.66 0.614916
Target:  5'- -cGGCcguGCUGGCGCgCagGCGCUcGCCg -3'
miRNA:   3'- ccUCGu--CGACCGCG-GagCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 53728 0.66 0.614916
Target:  5'- cGGGGCGGaucGGCGCgCggcguagCGCGgauCCGGCg -3'
miRNA:   3'- -CCUCGUCga-CCGCG-Ga------GCGU---GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 29122 0.66 0.614916
Target:  5'- cGAGCGGCUGcGCGagCUggcggaccgcUGCGCCGucGCCu -3'
miRNA:   3'- cCUCGUCGAC-CGCg-GA----------GCGUGGC--CGG- -5'
6350 5' -62.5 NC_001847.1 + 96483 0.66 0.614916
Target:  5'- cGGGCGGCgGGCGUCgccacggcaaCGCGgCGGgCa -3'
miRNA:   3'- cCUCGUCGaCCGCGGa---------GCGUgGCCgG- -5'
6350 5' -62.5 NC_001847.1 + 68440 0.66 0.614916
Target:  5'- -cAGCAGCaUGGCGCgggaGCGCCcGCUg -3'
miRNA:   3'- ccUCGUCG-ACCGCGgag-CGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 57155 0.66 0.614916
Target:  5'- ---aCAGCagGGCGCgCUCGCcGCCcGCCa -3'
miRNA:   3'- ccucGUCGa-CCGCG-GAGCG-UGGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.