miRNA display CGI


Results 1 - 20 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 33965 0.91 0.014384
Target:  5'- cGAGCGcGCUGGCGCCgggCGCGCUGGCCg -3'
miRNA:   3'- cCUCGU-CGACCGCGGa--GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 17006 0.78 0.110935
Target:  5'- gGGAcGCAGC--GCGCCUCGCAgaCGGCCu -3'
miRNA:   3'- -CCU-CGUCGacCGCGGAGCGUg-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 131830 0.78 0.119659
Target:  5'- cGGcGGCAGC-GGCGCC-CGCGCCGcGCUc -3'
miRNA:   3'- -CC-UCGUCGaCCGCGGaGCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 46442 0.66 0.615903
Target:  5'- cGGGcGCGGCgguggGGaugcgcgcgcggaugGCCUUGCGCaUGGCCa -3'
miRNA:   3'- -CCU-CGUCGa----CCg--------------CGGAGCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 25185 0.82 0.063067
Target:  5'- aGGuAGCAGCUGGCcagcgaGCCcCGCGCgCGGCCg -3'
miRNA:   3'- -CC-UCGUCGACCG------CGGaGCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 11331 0.81 0.064558
Target:  5'- cGGGCGGCUGGCGCCggagcgggagcacUCGUACgcgCGGCCg -3'
miRNA:   3'- cCUCGUCGACCGCGG-------------AGCGUG---GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 124576 0.8 0.0756
Target:  5'- gGGGGCcGCcGGCGCCgggcccgGCGCCGGCCg -3'
miRNA:   3'- -CCUCGuCGaCCGCGGag-----CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 7814 0.8 0.081674
Target:  5'- -cGGCAGCcGGcCGCCUCgGCGCCGGUCg -3'
miRNA:   3'- ccUCGUCGaCC-GCGGAG-CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 32744 0.79 0.0905
Target:  5'- cGGccGGCGGCUauuuucgcgggcGGCGCUUCGCgacgGCCGGCCg -3'
miRNA:   3'- -CC--UCGUCGA------------CCGCGGAGCG----UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 115694 0.78 0.105453
Target:  5'- cGGAGCGGCUGGC-CCggcagcggGCGCgCGGCCu -3'
miRNA:   3'- -CCUCGUCGACCGcGGag------CGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 8226 0.79 0.095246
Target:  5'- -aAGCAGCU-GCGCCaCGCGCUGGCCu -3'
miRNA:   3'- ccUCGUCGAcCGCGGaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 78308 0.8 0.089121
Target:  5'- cGGGCGGCUGggccgcccccuccccGCGCCcccaggCGCGCCGGCCc -3'
miRNA:   3'- cCUCGUCGAC---------------CGCGGa-----GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 15537 0.87 0.026505
Target:  5'- cGGGCuGCUGGCGCCggugCGCGCgCGGCCg -3'
miRNA:   3'- cCUCGuCGACCGCGGa---GCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 84546 0.79 0.095246
Target:  5'- cGGGGCGGggcGuGCGCCUCGUACaCGGCCu -3'
miRNA:   3'- -CCUCGUCga-C-CGCGGAGCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 74651 0.86 0.031065
Target:  5'- cGGGGCAGCUGcuGCGCCUgGaGCCGGCCg -3'
miRNA:   3'- -CCUCGUCGAC--CGCGGAgCgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 107789 0.8 0.085979
Target:  5'- gGGGGCAGCUGGgGCU--GCGgCGGCCg -3'
miRNA:   3'- -CCUCGUCGACCgCGGagCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 105148 0.79 0.102809
Target:  5'- cGGGCAGC-GGCGgCUcccgcCGCGCCGGCCc -3'
miRNA:   3'- cCUCGUCGaCCGCgGA-----GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 132383 0.78 0.116682
Target:  5'- gGGGGCgccGGCgccGGCGCCgcCGCGCCgGGCCg -3'
miRNA:   3'- -CCUCG---UCGa--CCGCGGa-GCGUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 9655 0.85 0.036394
Target:  5'- cGAGCAGCcgGGCGuCCUCGCGCCcGCCg -3'
miRNA:   3'- cCUCGUCGa-CCGC-GGAGCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 59821 0.81 0.06996
Target:  5'- aGAGCAGCguuugcgccaGCGCCUCGCggggcACCGGCCa -3'
miRNA:   3'- cCUCGUCGac--------CGCGGAGCG-----UGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.