miRNA display CGI


Results 1 - 20 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 84 0.67 0.524538
Target:  5'- cGGGCccgcucugGGCUccgccccuggguccGGCGCCccgCGCcCCGGCCc -3'
miRNA:   3'- cCUCG--------UCGA--------------CCGCGGa--GCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 224 0.67 0.527387
Target:  5'- gGGGGCccgAGCccGG-GCCUCGCGCCccgacGCCc -3'
miRNA:   3'- -CCUCG---UCGa-CCgCGGAGCGUGGc----CGG- -5'
6350 5' -62.5 NC_001847.1 + 289 0.68 0.480736
Target:  5'- cGAGCccGCgcgGGCGCCgucccCGCGCCccGCCg -3'
miRNA:   3'- cCUCGu-CGa--CCGCGGa----GCGUGGc-CGG- -5'
6350 5' -62.5 NC_001847.1 + 368 0.71 0.339807
Target:  5'- cGGGGCccGCcccGcGCGCCgCGCGCCGGaCCg -3'
miRNA:   3'- -CCUCGu-CGa--C-CGCGGaGCGUGGCC-GG- -5'
6350 5' -62.5 NC_001847.1 + 433 0.66 0.59522
Target:  5'- cGGGCGGCggcGGCGgCggcaGCAgCGGCg -3'
miRNA:   3'- cCUCGUCGa--CCGCgGag--CGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 479 0.68 0.471644
Target:  5'- cGGcAGCAGC-GGCGgCggCGgGgCGGCCg -3'
miRNA:   3'- -CC-UCGUCGaCCGCgGa-GCgUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 487 0.66 0.604074
Target:  5'- -uGGguGCccGCGCCUcCGCgccugcuGCCGGCCc -3'
miRNA:   3'- ccUCguCGacCGCGGA-GCG-------UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 759 0.68 0.471644
Target:  5'- aGGGCgaGGCcGGCccGCCgccggCgGCGCCGGCCu -3'
miRNA:   3'- cCUCG--UCGaCCG--CGGa----G-CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 878 0.7 0.386016
Target:  5'- --cGCGGC-GGCgGCC-CGCGCCggGGCCg -3'
miRNA:   3'- ccuCGUCGaCCG-CGGaGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 967 0.73 0.236805
Target:  5'- --cGCuGCgccgGGCGUCUaUGCGCCGGCCc -3'
miRNA:   3'- ccuCGuCGa---CCGCGGA-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 1137 0.77 0.132285
Target:  5'- -cAGCGGC-GGCGCCUCgGCGCgCGGCUc -3'
miRNA:   3'- ccUCGUCGaCCGCGGAG-CGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 1196 0.69 0.393296
Target:  5'- cGGccGGCAGCUcgucgGGCGCCagcuccagcgCGCGCCgcccgcaGGCCa -3'
miRNA:   3'- -CC--UCGUCGA-----CCGCGGa---------GCGUGG-------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 1294 0.73 0.224885
Target:  5'- -cGGUGGCUGGcCGCCUCGCccuccacgaaguCCGGCUc -3'
miRNA:   3'- ccUCGUCGACC-GCGGAGCGu-----------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 1491 0.69 0.402314
Target:  5'- -cAGCGGC-GGCGCCUCgggguagagccGCGCguaggCGGCCu -3'
miRNA:   3'- ccUCGUCGaCCGCGGAG-----------CGUG-----GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 1796 0.67 0.507568
Target:  5'- aGAGCAGCagcacgcccUGcGCGCCgagCGCGcucacguCCGGCg -3'
miRNA:   3'- cCUCGUCG---------AC-CGCGGa--GCGU-------GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 1917 0.69 0.419042
Target:  5'- cGGGGCAGgUGGCgaggcuuaGCCg-GCGCgCGGCg -3'
miRNA:   3'- -CCUCGUCgACCG--------CGGagCGUG-GCCGg -5'
6350 5' -62.5 NC_001847.1 + 1968 0.67 0.556178
Target:  5'- aGGGCAGCccGCGCC-CGCGCaGGUa -3'
miRNA:   3'- cCUCGUCGacCGCGGaGCGUGgCCGg -5'
6350 5' -62.5 NC_001847.1 + 1970 0.67 0.517911
Target:  5'- cGGGCGGCgccgccaGCGCCUC-C-CCGGCa -3'
miRNA:   3'- cCUCGUCGac-----CGCGGAGcGuGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 2209 0.67 0.556178
Target:  5'- cGGGGCGGCaguaGGcCGCCa-GCGCCgcGGCg -3'
miRNA:   3'- -CCUCGUCGa---CC-GCGGagCGUGG--CCGg -5'
6350 5' -62.5 NC_001847.1 + 2293 0.66 0.585407
Target:  5'- -cGGCGGCggGGcCGCCgggCgGCAUgGGCCc -3'
miRNA:   3'- ccUCGUCGa-CC-GCGGa--G-CGUGgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.