miRNA display CGI


Results 21 - 40 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 70374 0.79 0.092844
Target:  5'- gGGGGC-GCcggGGCGCgagCUCGCGCUGGCCa -3'
miRNA:   3'- -CCUCGuCGa--CCGCG---GAGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 84546 0.79 0.095246
Target:  5'- cGGGGCGGggcGuGCGCCUCGUACaCGGCCu -3'
miRNA:   3'- -CCUCGUCga-C-CGCGGAGCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 8226 0.79 0.095246
Target:  5'- -aAGCAGCU-GCGCCaCGCGCUGGCCu -3'
miRNA:   3'- ccUCGUCGAcCGCGGaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 105148 0.79 0.102809
Target:  5'- cGGGCAGC-GGCGgCUcccgcCGCGCCGGCCc -3'
miRNA:   3'- cCUCGUCGaCCGCgGA-----GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 2335 0.79 0.102809
Target:  5'- cGGGCAGC-GGCGgCUcccgcCGCGCCGGCCc -3'
miRNA:   3'- cCUCGUCGaCCGCgGA-----GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 127359 0.79 0.102809
Target:  5'- aGGGGCGGCggGGCccgaGCCUCgGCACCaacGGCCg -3'
miRNA:   3'- -CCUCGUCGa-CCG----CGGAG-CGUGG---CCGG- -5'
6350 5' -62.5 NC_001847.1 + 115694 0.78 0.105453
Target:  5'- cGGAGCGGCUGGC-CCggcagcggGCGCgCGGCCu -3'
miRNA:   3'- -CCUCGUCGACCGcGGag------CGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 20068 0.78 0.108161
Target:  5'- gGGAGCGGCgUGGCGgCUCccgcggcgcgGC-CCGGCCa -3'
miRNA:   3'- -CCUCGUCG-ACCGCgGAG----------CGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 17006 0.78 0.110935
Target:  5'- gGGAcGCAGC--GCGCCUCGCAgaCGGCCu -3'
miRNA:   3'- -CCU-CGUCGacCGCGGAGCGUg-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 52916 0.78 0.110935
Target:  5'- cGGGCAGCggcucggGGCGCC-CGCGaaGGCCg -3'
miRNA:   3'- cCUCGUCGa------CCGCGGaGCGUggCCGG- -5'
6350 5' -62.5 NC_001847.1 + 130898 0.78 0.110935
Target:  5'- -uGGCuGCUGGCGCagCUCGUGCCGGCg -3'
miRNA:   3'- ccUCGuCGACCGCG--GAGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 132383 0.78 0.116682
Target:  5'- gGGGGCgccGGCgccGGCGCCgcCGCGCCgGGCCg -3'
miRNA:   3'- -CCUCG---UCGa--CCGCGGa-GCGUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 29570 0.78 0.116682
Target:  5'- gGGGGCgccGGCgccGGCGCCgcCGCGCCgGGCCg -3'
miRNA:   3'- -CCUCG---UCGa--CCGCGGa-GCGUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 131830 0.78 0.119659
Target:  5'- cGGcGGCAGC-GGCGCC-CGCGCCGcGCUc -3'
miRNA:   3'- -CC-UCGUCGaCCGCGGaGCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 29017 0.78 0.119659
Target:  5'- cGGcGGCAGC-GGCGCC-CGCGCCGcGCUc -3'
miRNA:   3'- -CC-UCGUCGaCCGCGGaGCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 105569 0.77 0.129017
Target:  5'- cGGcGCGGC-GGCGCCg-GCGCCGGCg -3'
miRNA:   3'- -CCuCGUCGaCCGCGGagCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 2756 0.77 0.129017
Target:  5'- cGGcGCGGC-GGCGCCg-GCGCCGGCg -3'
miRNA:   3'- -CCuCGUCGaCCGCGGagCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 74831 0.77 0.129017
Target:  5'- cGAGCAGgUGGCGCgCgCGCGCCGcccGCCg -3'
miRNA:   3'- cCUCGUCgACCGCG-GaGCGUGGC---CGG- -5'
6350 5' -62.5 NC_001847.1 + 1137 0.77 0.132285
Target:  5'- -cAGCGGC-GGCGCCUCgGCGCgCGGCUc -3'
miRNA:   3'- ccUCGUCGaCCGCGGAG-CGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 103950 0.77 0.132285
Target:  5'- -cAGCGGC-GGCGCCUCgGCGCgCGGCUc -3'
miRNA:   3'- ccUCGUCGaCCGCGGAG-CGUG-GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.