miRNA display CGI


Results 41 - 60 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 42065 0.77 0.135628
Target:  5'- --uGgGGCUGGUGCCgcugcggCGCAUCGGCCu -3'
miRNA:   3'- ccuCgUCGACCGCGGa------GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 88364 0.77 0.135628
Target:  5'- aGGGGCGcGCgGGCGCggCGgACCGGCCc -3'
miRNA:   3'- -CCUCGU-CGaCCGCGgaGCgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 122015 0.77 0.135628
Target:  5'- cGGcaGGCGGCgcGGCGCCgcccgCGCGCCccGGCCg -3'
miRNA:   3'- -CC--UCGUCGa-CCGCGGa----GCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 33650 0.76 0.146129
Target:  5'- cGGuGCAGCcGGCGCCUCggucgcuagcGCGCCgcccuugcGGCCg -3'
miRNA:   3'- -CCuCGUCGaCCGCGGAG----------CGUGG--------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 77462 0.76 0.146129
Target:  5'- cGGGCuggGGCgGGCGCCgggCGC-CCGGCCc -3'
miRNA:   3'- cCUCG---UCGaCCGCGGa--GCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 100837 0.76 0.146129
Target:  5'- cGGGCGGCUccGGCcaggGCCggaGCGCCGGCCc -3'
miRNA:   3'- cCUCGUCGA--CCG----CGGag-CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 98170 0.76 0.146129
Target:  5'- cGGGCccGCUcgccGGCGCC-CGCGCUGGCCg -3'
miRNA:   3'- cCUCGu-CGA----CCGCGGaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 104708 0.76 0.149791
Target:  5'- cGuGCAGCcccGGCGCCUcCGCGCCcGCCa -3'
miRNA:   3'- cCuCGUCGa--CCGCGGA-GCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 94143 0.76 0.153537
Target:  5'- gGGAGguGCUGGgCGacauCUCGCGgCGGCUg -3'
miRNA:   3'- -CCUCguCGACC-GCg---GAGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 3313 0.76 0.157367
Target:  5'- --cGCGGCgcgGGCGCCgcugccgccgGCGCCGGCCu -3'
miRNA:   3'- ccuCGUCGa--CCGCGGag--------CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 106126 0.76 0.157367
Target:  5'- --cGCGGCgcgGGCGCCgcugccgccgGCGCCGGCCu -3'
miRNA:   3'- ccuCGUCGa--CCGCGGag--------CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 122103 0.76 0.157367
Target:  5'- aGGAgacGCAGUUGGCGCUgacgcugcaggUCGCGaCGGCCg -3'
miRNA:   3'- -CCU---CGUCGACCGCGG-----------AGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 29526 0.76 0.157367
Target:  5'- cGGcGCGGCUGGCGgC-CGCGCucgCGGCCc -3'
miRNA:   3'- -CCuCGUCGACCGCgGaGCGUG---GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 132339 0.76 0.157367
Target:  5'- cGGcGCGGCUGGCGgC-CGCGCucgCGGCCc -3'
miRNA:   3'- -CCuCGUCGACCGCgGaGCGUG---GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 103010 0.76 0.161283
Target:  5'- cGGGcGCGGC-GGCGCC-CaGCGCCGGCg -3'
miRNA:   3'- -CCU-CGUCGaCCGCGGaG-CGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 129024 0.76 0.161283
Target:  5'- -uGGCGGCgaGGCG-CUCGCGCCGcGCCu -3'
miRNA:   3'- ccUCGUCGa-CCGCgGAGCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 34279 0.76 0.161283
Target:  5'- -cGGCGGCUgGGCGCCgCGCuCgCGGCCg -3'
miRNA:   3'- ccUCGUCGA-CCGCGGaGCGuG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 3263 0.76 0.161283
Target:  5'- aGGGGC-GCcGGCGCCgCGCGgCCGGCg -3'
miRNA:   3'- -CCUCGuCGaCCGCGGaGCGU-GGCCGg -5'
6350 5' -62.5 NC_001847.1 + 12972 0.76 0.161283
Target:  5'- uGAGCAGgccaUGGCGCUgcaGUACCGGCUg -3'
miRNA:   3'- cCUCGUCg---ACCGCGGag-CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 73236 0.76 0.161283
Target:  5'- gGGGGCGGC-GGCGCgggCGCGCUcgaGGCCg -3'
miRNA:   3'- -CCUCGUCGaCCGCGga-GCGUGG---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.