miRNA display CGI


Results 41 - 60 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 97550 0.66 0.605059
Target:  5'- cGGGcCGGCccccGGcCGCCgcagcCGCAgCGGCCa -3'
miRNA:   3'- cCUC-GUCGa---CC-GCGGa----GCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 62005 0.66 0.605059
Target:  5'- aGAGCGGCgcGGgGCC---CugCGGCCg -3'
miRNA:   3'- cCUCGUCGa-CCgCGGagcGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 49420 0.66 0.605059
Target:  5'- --cGCAGcCUGcCGCCgUGCACUGGCg -3'
miRNA:   3'- ccuCGUC-GACcGCGGaGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 35954 0.66 0.605059
Target:  5'- uGGGcGCuGCUGGCGgCgcuGCugUGGCUc -3'
miRNA:   3'- -CCU-CGuCGACCGCgGag-CGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 60706 0.66 0.605059
Target:  5'- -uGGUAGC-GGCGCC-CGUugUGGUa -3'
miRNA:   3'- ccUCGUCGaCCGCGGaGCGugGCCGg -5'
6350 5' -62.5 NC_001847.1 + 44609 0.66 0.605059
Target:  5'- aGGGCcGCcagGGCGCCguucagcaugCGCGCCaGCUc -3'
miRNA:   3'- cCUCGuCGa--CCGCGGa---------GCGUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 131925 0.66 0.605059
Target:  5'- --cGCGGC-GGCGCggaggcacgUGCGCCGGCg -3'
miRNA:   3'- ccuCGUCGaCCGCGga-------GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 487 0.66 0.604074
Target:  5'- -uGGguGCccGCGCCUcCGCgccugcuGCCGGCCc -3'
miRNA:   3'- ccUCguCGacCGCGGA-GCG-------UGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 90860 0.66 0.604074
Target:  5'- cGGGGCcggGGCUGGUGUCgaggccggggccgUUGCccagucGCCGGCg -3'
miRNA:   3'- -CCUCG---UCGACCGCGG-------------AGCG------UGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 52611 0.66 0.603089
Target:  5'- cGGGCGGCgccuuugacuucGGCGCgUgcgcgaGCGCCGcGCCa -3'
miRNA:   3'- cCUCGUCGa-----------CCGCGgAg-----CGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 48641 0.66 0.599153
Target:  5'- -cGGCGGCggGGCGCCgccgcccccgcagccUCGUcguCCGuGCCg -3'
miRNA:   3'- ccUCGUCGa-CCGCGG---------------AGCGu--GGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 28834 0.66 0.599153
Target:  5'- uGGuGCGGCUGcuagaacgcgcggccGCGCgCgCGaCGCCGGCg -3'
miRNA:   3'- -CCuCGUCGAC---------------CGCG-GaGC-GUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 16918 0.66 0.59522
Target:  5'- cGGGCcGCUcGGCGCa--GaCGCCGGUCu -3'
miRNA:   3'- cCUCGuCGA-CCGCGgagC-GUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 131261 0.66 0.59522
Target:  5'- --cGCcGC-GGCGCCgCGCgACgGGCCg -3'
miRNA:   3'- ccuCGuCGaCCGCGGaGCG-UGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 16058 0.66 0.59522
Target:  5'- -cGGCGGCcgcGGCGCCUC-UGCUGGgCg -3'
miRNA:   3'- ccUCGUCGa--CCGCGGAGcGUGGCCgG- -5'
6350 5' -62.5 NC_001847.1 + 29479 0.66 0.59522
Target:  5'- --cGCGGCcgaGGCGgCaCGCucuCCGGCCg -3'
miRNA:   3'- ccuCGUCGa--CCGCgGaGCGu--GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 103246 0.66 0.59522
Target:  5'- cGGGCGGCggcGGCGgCggcaGCAgCGGCg -3'
miRNA:   3'- cCUCGUCGa--CCGCgGag--CGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 102689 0.66 0.59522
Target:  5'- cGGGGCgggGGCagGGCGCCgggCGgGCggcgaaaGGCCc -3'
miRNA:   3'- -CCUCG---UCGa-CCGCGGa--GCgUGg------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 125582 0.66 0.59522
Target:  5'- cGGGCGGCgGGCuggacgGCUgcaGCGCUGGCg -3'
miRNA:   3'- cCUCGUCGaCCG------CGGag-CGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 74385 0.66 0.59522
Target:  5'- uGGcGCuggAGCUGGaaaacCGCCacCGCGCCGcGCCc -3'
miRNA:   3'- -CCuCG---UCGACC-----GCGGa-GCGUGGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.