miRNA display CGI


Results 21 - 40 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 52266 0.66 0.614916
Target:  5'- -uGGCuGCgGcGCGCC-CGCACgGGCg -3'
miRNA:   3'- ccUCGuCGaC-CGCGGaGCGUGgCCGg -5'
6350 5' -62.5 NC_001847.1 + 4829 0.66 0.614916
Target:  5'- gGGGGCGGgUGG-GUCg---GCCGGCCg -3'
miRNA:   3'- -CCUCGUCgACCgCGGagcgUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 33376 0.66 0.614916
Target:  5'- -cAGCAGUcuGCGCCUCcUGgCGGCCg -3'
miRNA:   3'- ccUCGUCGacCGCGGAGcGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 78415 0.66 0.61393
Target:  5'- cGGGCGcgcuGCUGGCGCg-CGCGCUgacggaggagcugGGCUg -3'
miRNA:   3'- cCUCGU----CGACCGCGgaGCGUGG-------------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 54247 0.66 0.61393
Target:  5'- uGGGCAGCgcugcggUGGCGCC-CGaCGagCGGCUc -3'
miRNA:   3'- cCUCGUCG-------ACCGCGGaGC-GUg-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 101027 0.66 0.609
Target:  5'- --cGCGGCaGGCGCCgcaggcuccgccgcCGCGCgagccacggCGGCCg -3'
miRNA:   3'- ccuCGUCGaCCGCGGa-------------GCGUG---------GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 98560 0.66 0.605059
Target:  5'- aGAGCGGCgugccgucGGCGUCcagguaggCGCGCgGcGCCa -3'
miRNA:   3'- cCUCGUCGa-------CCGCGGa-------GCGUGgC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 131925 0.66 0.605059
Target:  5'- --cGCGGC-GGCGCggaggcacgUGCGCCGGCg -3'
miRNA:   3'- ccuCGUCGaCCGCGga-------GCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 113940 0.66 0.605059
Target:  5'- cGGucGCGGC-GGCGUCUCcuacgcCGCCGGgCg -3'
miRNA:   3'- -CCu-CGUCGaCCGCGGAGc-----GUGGCCgG- -5'
6350 5' -62.5 NC_001847.1 + 132269 0.66 0.605059
Target:  5'- --cGCGGCgcGGCgGCCcgCGCGUCGGCCn -3'
miRNA:   3'- ccuCGUCGa-CCG-CGGa-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 29456 0.66 0.605059
Target:  5'- --cGCGGCgcGGCgGCCcgCGCGUCGGCCn -3'
miRNA:   3'- ccuCGUCGa-CCG-CGGa-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 30242 0.66 0.605059
Target:  5'- aGGuGCGcgugucGCUGGCgGCgUUGCAgCGcGCCg -3'
miRNA:   3'- -CCuCGU------CGACCG-CGgAGCGUgGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 35830 0.66 0.605059
Target:  5'- cGGAGCGcaucgacgcGCUgcgcgagcugaGGCGCCaccucgacgCGCugCGGCg -3'
miRNA:   3'- -CCUCGU---------CGA-----------CCGCGGa--------GCGugGCCGg -5'
6350 5' -62.5 NC_001847.1 + 124072 0.66 0.605059
Target:  5'- cGGGGUggaacaGGCaGGUgaacuGCCgcCGCugCGGCCa -3'
miRNA:   3'- -CCUCG------UCGaCCG-----CGGa-GCGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 97550 0.66 0.605059
Target:  5'- cGGGcCGGCccccGGcCGCCgcagcCGCAgCGGCCa -3'
miRNA:   3'- cCUC-GUCGa---CC-GCGGa----GCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 10097 0.66 0.605059
Target:  5'- gGGAGCacaAGCggcgGGgaaagcCGCCuUCGCGgcgagcgggcCCGGCCg -3'
miRNA:   3'- -CCUCG---UCGa---CC------GCGG-AGCGU----------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 79071 0.66 0.605059
Target:  5'- cGGAGCcgGGCgcgugcgacGuGUGCCcgUGCGCCGcGCCg -3'
miRNA:   3'- -CCUCG--UCGa--------C-CGCGGa-GCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 60706 0.66 0.605059
Target:  5'- -uGGUAGC-GGCGCC-CGUugUGGUa -3'
miRNA:   3'- ccUCGUCGaCCGCGGaGCGugGCCGg -5'
6350 5' -62.5 NC_001847.1 + 35954 0.66 0.605059
Target:  5'- uGGGcGCuGCUGGCGgCgcuGCugUGGCUc -3'
miRNA:   3'- -CCU-CGuCGACCGCgGag-CGugGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 44609 0.66 0.605059
Target:  5'- aGGGCcGCcagGGCGCCguucagcaugCGCGCCaGCUc -3'
miRNA:   3'- cCUCGuCGa--CCGCGGa---------GCGUGGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.