Results 1 - 20 of 879 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6350 | 5' | -62.5 | NC_001847.1 | + | 46442 | 0.66 | 0.615903 |
Target: 5'- cGGGcGCGGCgguggGGaugcgcgcgcggaugGCCUUGCGCaUGGCCa -3' miRNA: 3'- -CCU-CGUCGa----CCg--------------CGGAGCGUG-GCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 33376 | 0.66 | 0.614916 |
Target: 5'- -cAGCAGUcuGCGCCUCcUGgCGGCCg -3' miRNA: 3'- ccUCGUCGacCGCGGAGcGUgGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 86124 | 0.66 | 0.614916 |
Target: 5'- cGAGCGGCUccgcgacgcGGCGCU----GCCGGCUu -3' miRNA: 3'- cCUCGUCGA---------CCGCGGagcgUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 12910 | 0.66 | 0.614916 |
Target: 5'- -cGGCGGCauguacgugGGCGCCccugaggGCACCcGGCCc -3' miRNA: 3'- ccUCGUCGa--------CCGCGGag-----CGUGG-CCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 43389 | 0.66 | 0.614916 |
Target: 5'- cGGAGCGcccGCggaccgaugGGCGuacgcggaCCUCGCGCUgcugcugcuGGCCg -3' miRNA: 3'- -CCUCGU---CGa--------CCGC--------GGAGCGUGG---------CCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 49936 | 0.66 | 0.614916 |
Target: 5'- --cGCAcGUUGGaCGCCguggCGCGCgGuGCCg -3' miRNA: 3'- ccuCGU-CGACC-GCGGa---GCGUGgC-CGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 83267 | 0.66 | 0.614916 |
Target: 5'- cGGcGGgGGCgGGCGCagaggCGCACaccugCGGCCu -3' miRNA: 3'- -CC-UCgUCGaCCGCGga---GCGUG-----GCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 107642 | 0.66 | 0.614916 |
Target: 5'- gGGGGCGGgUGG-GUCg---GCCGGCCg -3' miRNA: 3'- -CCUCGUCgACCgCGGagcgUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 100675 | 0.66 | 0.614916 |
Target: 5'- gGGGGUccccAGgaGGCuuUCUCGCACCcaggcGGCCa -3' miRNA: 3'- -CCUCG----UCgaCCGc-GGAGCGUGG-----CCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 39179 | 0.66 | 0.614916 |
Target: 5'- cGGcAGCGGCUGcuGCGCucacgCUCGC-CC-GCCa -3' miRNA: 3'- -CC-UCGUCGAC--CGCG-----GAGCGuGGcCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 4829 | 0.66 | 0.614916 |
Target: 5'- gGGGGCGGgUGG-GUCg---GCCGGCCg -3' miRNA: 3'- -CCUCGUCgACCgCGGagcgUGGCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 38559 | 0.66 | 0.614916 |
Target: 5'- uGGAuGUcucGCcgGGCGCCcagGCACaCGGCCa -3' miRNA: 3'- -CCU-CGu--CGa-CCGCGGag-CGUG-GCCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 52266 | 0.66 | 0.614916 |
Target: 5'- -uGGCuGCgGcGCGCC-CGCACgGGCg -3' miRNA: 3'- ccUCGuCGaC-CGCGGaGCGUGgCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 57155 | 0.66 | 0.614916 |
Target: 5'- ---aCAGCagGGCGCgCUCGCcGCCcGCCa -3' miRNA: 3'- ccucGUCGa-CCGCG-GAGCG-UGGcCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 68440 | 0.66 | 0.614916 |
Target: 5'- -cAGCAGCaUGGCGCgggaGCGCCcGCUg -3' miRNA: 3'- ccUCGUCG-ACCGCGgag-CGUGGcCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 96483 | 0.66 | 0.614916 |
Target: 5'- cGGGCGGCgGGCGUCgccacggcaaCGCGgCGGgCa -3' miRNA: 3'- cCUCGUCGaCCGCGGa---------GCGUgGCCgG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 29122 | 0.66 | 0.614916 |
Target: 5'- cGAGCGGCUGcGCGagCUggcggaccgcUGCGCCGucGCCu -3' miRNA: 3'- cCUCGUCGAC-CGCg-GA----------GCGUGGC--CGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 53728 | 0.66 | 0.614916 |
Target: 5'- cGGGGCGGaucGGCGCgCggcguagCGCGgauCCGGCg -3' miRNA: 3'- -CCUCGUCga-CCGCG-Ga------GCGU---GGCCGg -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 85669 | 0.66 | 0.614916 |
Target: 5'- -cGGCcguGCUGGCGCgCagGCGCUcGCCg -3' miRNA: 3'- ccUCGu--CGACCGCG-GagCGUGGcCGG- -5' |
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6350 | 5' | -62.5 | NC_001847.1 | + | 128181 | 0.66 | 0.614916 |
Target: 5'- cGGGCGGaa-GCGCCgccgcgacccCGCGCCuGGCCc -3' miRNA: 3'- cCUCGUCgacCGCGGa---------GCGUGG-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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