miRNA display CGI


Results 81 - 100 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 11480 0.7 0.373295
Target:  5'- cGAGCcccgccacacaucuGGCUcaGGCGCCUucagccaagggcgcCGCcCCGGCCg -3'
miRNA:   3'- cCUCG--------------UCGA--CCGCGGA--------------GCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 11570 0.73 0.253906
Target:  5'- gGGuGCGGCUgccgcGGUGCCgguugcuucUGCGCUGGCCg -3'
miRNA:   3'- -CCuCGUCGA-----CCGCGGa--------GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 11585 0.66 0.585407
Target:  5'- -cGGCGGCcccGGCccaaGCCccguUCGCAgCGGCCu -3'
miRNA:   3'- ccUCGUCGa--CCG----CGG----AGCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 11663 0.71 0.339807
Target:  5'- cGGcGGCGGUgaagggGGCGCU--GCAUCGGCCu -3'
miRNA:   3'- -CC-UCGUCGa-----CCGCGGagCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 11789 0.67 0.527387
Target:  5'- cGGGCAG-UGGCGCuUUCGaC-CCGGCg -3'
miRNA:   3'- cCUCGUCgACCGCG-GAGC-GuGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 11895 0.71 0.332506
Target:  5'- uGGuGCGGCcGGgGUC-CGCGCUGGCg -3'
miRNA:   3'- -CCuCGUCGaCCgCGGaGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 11969 0.75 0.16938
Target:  5'- uGGGCGGCUGaGCGCCgcCGCGCCGucuCCg -3'
miRNA:   3'- cCUCGUCGAC-CGCGGa-GCGUGGCc--GG- -5'
6350 5' -62.5 NC_001847.1 + 12041 0.75 0.186671
Target:  5'- cGGAGC-GCUGGaCGCCcugCGCGCUgcggacgccgaGGCCg -3'
miRNA:   3'- -CCUCGuCGACC-GCGGa--GCGUGG-----------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 12429 0.68 0.49917
Target:  5'- uGAGUgcgGGCUccaaGGCGCCggcacagCGCGCgCGGCg -3'
miRNA:   3'- cCUCG---UCGA----CCGCGGa------GCGUG-GCCGg -5'
6350 5' -62.5 NC_001847.1 + 12502 0.68 0.49917
Target:  5'- cGGAggccGCAGCcGGCGCgUCGUcaaagACCaGGUCu -3'
miRNA:   3'- -CCU----CGUCGaCCGCGgAGCG-----UGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 12571 0.7 0.354754
Target:  5'- cGGGCGccGCguacgcGGCGcCCUCGCACucgugCGGCCa -3'
miRNA:   3'- cCUCGU--CGa-----CCGC-GGAGCGUG-----GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 12910 0.66 0.614916
Target:  5'- -cGGCGGCauguacgugGGCGCCccugaggGCACCcGGCCc -3'
miRNA:   3'- ccUCGUCGa--------CCGCGGag-----CGUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 12972 0.76 0.161283
Target:  5'- uGAGCAGgccaUGGCGCUgcaGUACCGGCUg -3'
miRNA:   3'- cCUCGUCg---ACCGCGGag-CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 13004 0.75 0.177839
Target:  5'- --cGC-GC-GGCGCCcugCGCGCCGGCCg -3'
miRNA:   3'- ccuCGuCGaCCGCGGa--GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 13120 0.72 0.291136
Target:  5'- cGGGGCGcGCgggcGGCGCCgCGCcGCCuGCCg -3'
miRNA:   3'- -CCUCGU-CGa---CCGCGGaGCG-UGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 13249 0.67 0.517911
Target:  5'- cGGGGCcacGCgGGCGgUUCGCAggcaGGCCg -3'
miRNA:   3'- -CCUCGu--CGaCCGCgGAGCGUgg--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 13329 0.69 0.41398
Target:  5'- cGAGCuguaccuGCUGGCGCUacggcacucagaggCGC-CCGGCUa -3'
miRNA:   3'- cCUCGu------CGACCGCGGa-------------GCGuGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 13338 0.68 0.471644
Target:  5'- cGGGCGGCgagcaGGCGCC-CGCGaggacgcuCCaGCCg -3'
miRNA:   3'- cCUCGUCGa----CCGCGGaGCGU--------GGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 13913 0.7 0.3624
Target:  5'- -cGGUGGCUGGgGCgCUCgGUGCCGcGCCg -3'
miRNA:   3'- ccUCGUCGACCgCG-GAG-CGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 14098 0.67 0.527387
Target:  5'- cGGAgGC-GCUGGCGgaccacccgcaCCUCGuCACgGGCg -3'
miRNA:   3'- -CCU-CGuCGACCGC-----------GGAGC-GUGgCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.