miRNA display CGI


Results 81 - 100 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 126910 0.74 0.200642
Target:  5'- uGAG-AGCUGGCGCgggucccagggCUCGCACUcgGGCCa -3'
miRNA:   3'- cCUCgUCGACCGCG-----------GAGCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 133565 0.74 0.205498
Target:  5'- cGAGCGgcgcGCUGGCGCgCgcCGUGCUGGCCu -3'
miRNA:   3'- cCUCGU----CGACCGCG-Ga-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 55440 0.74 0.215515
Target:  5'- cGGuccuGCAGCgccUGGCGCCggcggggcgCGCGCCGcGCUa -3'
miRNA:   3'- -CCu---CGUCG---ACCGCGGa--------GCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 9612 0.74 0.220678
Target:  5'- gGGAcgaccGUAGCUGcGCccGCCgcCGCGCCGGCCc -3'
miRNA:   3'- -CCU-----CGUCGAC-CG--CGGa-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 104107 0.73 0.224885
Target:  5'- -cGGUGGCUGGcCGCCUCGCccuccacgaaguCCGGCUc -3'
miRNA:   3'- ccUCGUCGACC-GCGGAGCGu-----------GGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 24327 0.73 0.236805
Target:  5'- cGAGCGGUgGcGCGCCacgcCGCGCgCGGCCu -3'
miRNA:   3'- cCUCGUCGaC-CGCGGa---GCGUG-GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 14814 0.73 0.248096
Target:  5'- cGGAGCuGCgcGGCGCCcUGCGCgCGGUg -3'
miRNA:   3'- -CCUCGuCGa-CCGCGGaGCGUG-GCCGg -5'
6350 5' -62.5 NC_001847.1 + 34691 0.76 0.161283
Target:  5'- aGGAGC-GCUGGCGCgaggacuugCGCGCCGcGCUg -3'
miRNA:   3'- -CCUCGuCGACCGCGga-------GCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 132339 0.76 0.157367
Target:  5'- cGGcGCGGCUGGCGgC-CGCGCucgCGGCCc -3'
miRNA:   3'- -CCuCGUCGACCGCgGaGCGUG---GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 100837 0.76 0.146129
Target:  5'- cGGGCGGCUccGGCcaggGCCggaGCGCCGGCCc -3'
miRNA:   3'- cCUCGUCGA--CCG----CGGag-CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 127754 0.72 0.27201
Target:  5'- -cAGCAGCUgcGGCGgCUUGC-CCGGCa -3'
miRNA:   3'- ccUCGUCGA--CCGCgGAGCGuGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 106730 0.72 0.278271
Target:  5'- cGGGCgccGGUUGcGCGCC-CGCGCUGGCg -3'
miRNA:   3'- cCUCG---UCGAC-CGCGGaGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 34757 0.72 0.284646
Target:  5'- -cGGCcgAGCUGGCGCggcugCGCGCCgcGGCCg -3'
miRNA:   3'- ccUCG--UCGACCGCGga---GCGUGG--CCGG- -5'
6350 5' -62.5 NC_001847.1 + 43784 0.72 0.290482
Target:  5'- --cGguGCUGgacgcgcGCGCCggCGCGCCGGUCg -3'
miRNA:   3'- ccuCguCGAC-------CGCGGa-GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 33795 0.72 0.291136
Target:  5'- cGGGGCuGCgcgcGGCGCCcggCGCGCUGGa- -3'
miRNA:   3'- -CCUCGuCGa---CCGCGGa--GCGUGGCCgg -5'
6350 5' -62.5 NC_001847.1 + 11331 0.81 0.064558
Target:  5'- cGGGCGGCUGGCGCCggagcgggagcacUCGUACgcgCGGCCg -3'
miRNA:   3'- cCUCGUCGACCGCGG-------------AGCGUG---GCCGG- -5'
6350 5' -62.5 NC_001847.1 + 7814 0.8 0.081674
Target:  5'- -cGGCAGCcGGcCGCCUCgGCGCCGGUCg -3'
miRNA:   3'- ccUCGUCGaCC-GCGGAG-CGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 70374 0.79 0.092844
Target:  5'- gGGGGC-GCcggGGCGCgagCUCGCGCUGGCCa -3'
miRNA:   3'- -CCUCGuCGa--CCGCG---GAGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 105148 0.79 0.102809
Target:  5'- cGGGCAGC-GGCGgCUcccgcCGCGCCGGCCc -3'
miRNA:   3'- cCUCGUCGaCCGCgGA-----GCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 105569 0.77 0.129017
Target:  5'- cGGcGCGGC-GGCGCCg-GCGCCGGCg -3'
miRNA:   3'- -CCuCGUCGaCCGCGGagCGUGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.