miRNA display CGI


Results 61 - 80 of 517 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 3' -60.4 NC_001847.1 + 22118 0.66 0.716374
Target:  5'- --gACAGCgggcgcgcccugGGCCCGgcGGCGGCggcggCGCg -3'
miRNA:   3'- ggaUGUUGa-----------CCGGGC--CCGCCGa----GCGg -5'
6351 3' -60.4 NC_001847.1 + 124931 0.66 0.716374
Target:  5'- --gACAGCgggcgcgcccugGGCCCGgcGGCGGCggcggCGCg -3'
miRNA:   3'- ggaUGUUGa-----------CCGGGC--CCGCCGa----GCGg -5'
6351 3' -60.4 NC_001847.1 + 31554 0.66 0.715409
Target:  5'- --gACGACgaGGCCggcgccgccggcggCGGGcCGGCcUCGCCc -3'
miRNA:   3'- ggaUGUUGa-CCGG--------------GCCC-GCCG-AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 134367 0.66 0.715409
Target:  5'- --gACGACgaGGCCggcgccgccggcggCGGGcCGGCcUCGCCc -3'
miRNA:   3'- ggaUGUUGa-CCGG--------------GCCC-GCCG-AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 38475 0.66 0.715409
Target:  5'- uCCUGCAggauagccucgaggACgucGCCgggGGGCGGCgcggUCGCCg -3'
miRNA:   3'- -GGAUGU--------------UGac-CGGg--CCCGCCG----AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 117879 0.66 0.71251
Target:  5'- gCCUGC-ACUGGuuccgcaacggcuacCCCGuGGaGGCUCGgCa -3'
miRNA:   3'- -GGAUGuUGACC---------------GGGC-CCgCCGAGCgG- -5'
6351 3' -60.4 NC_001847.1 + 28962 0.66 0.708636
Target:  5'- uCCUGCAGa--GCCUGcGGCGcGCguaCGCCc -3'
miRNA:   3'- -GGAUGUUgacCGGGC-CCGC-CGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 73843 0.66 0.708636
Target:  5'- uCCUGCcggcauucCUGGCgCGcuaggcGGCGGCgcggCGCCc -3'
miRNA:   3'- -GGAUGuu------GACCGgGC------CCGCCGa---GCGG- -5'
6351 3' -60.4 NC_001847.1 + 130796 0.66 0.708636
Target:  5'- --gGCGGCcgcGGCCgGGGCGGaggCgGCCg -3'
miRNA:   3'- ggaUGUUGa--CCGGgCCCGCCga-G-CGG- -5'
6351 3' -60.4 NC_001847.1 + 53831 0.66 0.708636
Target:  5'- --cGCGGCUGGCggCGGcaGCGGCggCGCUg -3'
miRNA:   3'- ggaUGUUGACCGg-GCC--CGCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 132596 0.66 0.708636
Target:  5'- --gGCcGCcccGGCCC-GGCGGCgggagCGCCg -3'
miRNA:   3'- ggaUGuUGa--CCGGGcCCGCCGa----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 131775 0.66 0.708636
Target:  5'- uCCUGCAGa--GCCUGcGGCGcGCguaCGCCc -3'
miRNA:   3'- -GGAUGUUgacCGGGC-CCGC-CGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 29783 0.66 0.708636
Target:  5'- --gGCcGCcccGGCCC-GGCGGCgggagCGCCg -3'
miRNA:   3'- ggaUGuUGa--CCGGGcCCGCCGa----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 39604 0.66 0.708636
Target:  5'- gCUGCGGCgcGGCCCcagccccagGGGCaagccuGGCgCGCCc -3'
miRNA:   3'- gGAUGUUGa-CCGGG---------CCCG------CCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 27983 0.66 0.708636
Target:  5'- --gGCGGCcgcGGCCgGGGCGGaggCgGCCg -3'
miRNA:   3'- ggaUGUUGa--CCGGgCCCGCCga-G-CGG- -5'
6351 3' -60.4 NC_001847.1 + 869 0.66 0.708636
Target:  5'- aCCUccacgcGCGGCggcGGCCCGcGccggggccgccGCGGC-CGCCg -3'
miRNA:   3'- -GGA------UGUUGa--CCGGGC-C-----------CGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 63986 0.66 0.708636
Target:  5'- gCC-GCAcCUGGUCCGcGaGCuccuGCUCGCCg -3'
miRNA:   3'- -GGaUGUuGACCGGGC-C-CGc---CGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 130752 0.66 0.708636
Target:  5'- --gACAGCgccugGGCCgCGGcGCGcgcGCUCGCg -3'
miRNA:   3'- ggaUGUUGa----CCGG-GCC-CGC---CGAGCGg -5'
6351 3' -60.4 NC_001847.1 + 52815 0.66 0.708636
Target:  5'- gCCgcGCAcACUGGaCCuCGGGCGuuucGCgggCGCCg -3'
miRNA:   3'- -GGa-UGU-UGACC-GG-GCCCGC----CGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 103682 0.66 0.708636
Target:  5'- aCCUccacgcGCGGCggcGGCCCGcGccggggccgccGCGGC-CGCCg -3'
miRNA:   3'- -GGA------UGUUGa--CCGGGC-C-----------CGCCGaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.