Results 41 - 60 of 517 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6351 | 3' | -60.4 | NC_001847.1 | + | 41617 | 0.66 | 0.725985 |
Target: 5'- uUCUGCuccgccgugaUGGCCgCGaGCGGCgCGCCg -3' miRNA: 3'- -GGAUGuug-------ACCGG-GCcCGCCGaGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 39700 | 0.66 | 0.725985 |
Target: 5'- cCCUACcguuaucggauCUGGCUcugcgcuguCGGGCcuuGGCUcCGCCg -3' miRNA: 3'- -GGAUGuu---------GACCGG---------GCCCG---CCGA-GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 116608 | 0.66 | 0.722149 |
Target: 5'- gCUACuAC-GGCCUGGcCGGCacccuggagacgaacUCGCCa -3' miRNA: 3'- gGAUGuUGaCCGGGCCcGCCG---------------AGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 69322 | 0.66 | 0.718302 |
Target: 5'- uUUugGGCgcgGGCCuCGGGCGcuGCUgGCg -3' miRNA: 3'- gGAugUUGa--CCGG-GCCCGC--CGAgCGg -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 75703 | 0.66 | 0.718302 |
Target: 5'- gCCgcucggGCcACgGGCCgCGGGCcGC-CGCCg -3' miRNA: 3'- -GGa-----UGuUGaCCGG-GCCCGcCGaGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 53250 | 0.66 | 0.718302 |
Target: 5'- gCUGCGGCgccGCCUcGGCGGggCGCUg -3' miRNA: 3'- gGAUGUUGac-CGGGcCCGCCgaGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 22800 | 0.66 | 0.718302 |
Target: 5'- --aACAGCUcguagaugcgGGCCgGcGGCGGC-CGCUc -3' miRNA: 3'- ggaUGUUGA----------CCGGgC-CCGCCGaGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 34265 | 0.66 | 0.718302 |
Target: 5'- --cGCAgACcGGCgCGcGGCGGCUgggCGCCg -3' miRNA: 3'- ggaUGU-UGaCCGgGC-CCGCCGA---GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 124580 | 0.66 | 0.718302 |
Target: 5'- gCCgcCGGCgccgGGCCCGGcGCcGGCcgggCGCg -3' miRNA: 3'- -GGauGUUGa---CCGGGCC-CG-CCGa---GCGg -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 21767 | 0.66 | 0.718302 |
Target: 5'- gCCgcCGGCgccgGGCCCGGcGCcGGCcgggCGCg -3' miRNA: 3'- -GGauGUUGa---CCGGGCC-CG-CCGa---GCGg -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 44071 | 0.66 | 0.718302 |
Target: 5'- uCgUGCAGCUGucguGCCUGcuGCGGCgucugCGCCc -3' miRNA: 3'- -GgAUGUUGAC----CGGGCc-CGCCGa----GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 58196 | 0.66 | 0.718302 |
Target: 5'- gCCUucggcCAGCaGGCgcuCCGGGCGGaucugccCGCCg -3' miRNA: 3'- -GGAu----GUUGaCCG---GGCCCGCCga-----GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 35450 | 0.66 | 0.718302 |
Target: 5'- uUUACGGC-GGCCCGcGCcGCgCGCCg -3' miRNA: 3'- gGAUGUUGaCCGGGCcCGcCGaGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 51541 | 0.66 | 0.718302 |
Target: 5'- --gGCGGCgcccaGGCgUCGGcGCaGCUCGCCa -3' miRNA: 3'- ggaUGUUGa----CCG-GGCC-CGcCGAGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 89028 | 0.66 | 0.718302 |
Target: 5'- cCCUACGACgccgugUGcGCgCUGGGCgacggcauGGCgCGCCg -3' miRNA: 3'- -GGAUGUUG------AC-CG-GGCCCG--------CCGaGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 88377 | 0.66 | 0.718302 |
Target: 5'- --cGCGGCggaccGGCCCcgcgcggcGGGCGgGCgCGCCg -3' miRNA: 3'- ggaUGUUGa----CCGGG--------CCCGC-CGaGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 132540 | 0.66 | 0.718302 |
Target: 5'- aCCUccggcGCGGCgGGCUCGcGuGCGGC-CGCg -3' miRNA: 3'- -GGA-----UGUUGaCCGGGC-C-CGCCGaGCGg -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 52396 | 0.66 | 0.718302 |
Target: 5'- uCCgGCAagcGCUccaGCgCGGGCGGCgcgCGCUg -3' miRNA: 3'- -GGaUGU---UGAc--CGgGCCCGCCGa--GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 121033 | 0.66 | 0.718302 |
Target: 5'- cCCgugACGA--GGUgCGGGUGGUcCGCCa -3' miRNA: 3'- -GGa--UGUUgaCCGgGCCCGCCGaGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 85049 | 0.66 | 0.718302 |
Target: 5'- cCCaGCAGCUGGCCgagcaucagGGGCG-CggUGCCa -3' miRNA: 3'- -GGaUGUUGACCGGg--------CCCGCcGa-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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