miRNA display CGI


Results 41 - 60 of 517 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 3' -60.4 NC_001847.1 + 11326 0.71 0.422328
Target:  5'- gCCggcggGCGGCUGGCgCCGGaGCGGgagcaCUCGUa -3'
miRNA:   3'- -GGa----UGUUGACCG-GGCC-CGCC-----GAGCGg -5'
6351 3' -60.4 NC_001847.1 + 11661 0.73 0.342259
Target:  5'- gCUUGCGGCggccccagccGaGCCCGcGGCGGCcgUCGCCg -3'
miRNA:   3'- -GGAUGUUGa---------C-CGGGC-CCGCCG--AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 12307 0.67 0.639722
Target:  5'- gCC-AgGGCgcgGGCCCgguGGGCGcGCcCGCCg -3'
miRNA:   3'- -GGaUgUUGa--CCGGG---CCCGC-CGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 12607 0.72 0.380891
Target:  5'- gCCaGCGACcggcagGGUCCGGGCGGCacugcUCGUa -3'
miRNA:   3'- -GGaUGUUGa-----CCGGGCCCGCCG-----AGCGg -5'
6351 3' -60.4 NC_001847.1 + 12957 0.67 0.669445
Target:  5'- --gGCGGCgGGCCgGgGGUGGCccggUCGCUg -3'
miRNA:   3'- ggaUGUUGaCCGGgC-CCGCCG----AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 13114 0.73 0.342259
Target:  5'- --cGCGGCcggGGCgCgCGGGCGGCgccgCGCCg -3'
miRNA:   3'- ggaUGUUGa--CCG-G-GCCCGCCGa---GCGG- -5'
6351 3' -60.4 NC_001847.1 + 13245 0.72 0.388959
Target:  5'- ---cCAGCggGGCCacgCGGGCGGUUCGCa -3'
miRNA:   3'- ggauGUUGa-CCGG---GCCCGCCGAGCGg -5'
6351 3' -60.4 NC_001847.1 + 13439 0.68 0.608957
Target:  5'- gCCUGC-GCUGGCUguaucuagCGGGCGcgcaccuGCUCggGCCg -3'
miRNA:   3'- -GGAUGuUGACCGG--------GCCCGC-------CGAG--CGG- -5'
6351 3' -60.4 NC_001847.1 + 13953 0.68 0.609948
Target:  5'- gCUGCGGCUgcGGCCCGuGG-GaGCcCGCCc -3'
miRNA:   3'- gGAUGUUGA--CCGGGC-CCgC-CGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 14122 0.69 0.560722
Target:  5'- aCCUcgucacggGCGAUgggcggGGCCCgcgccuGGGCGGC-CGCUa -3'
miRNA:   3'- -GGA--------UGUUGa-----CCGGG------CCCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 14156 0.76 0.211548
Target:  5'- --cGCAGCggcGGCCgGGGCGGCcgCGCUa -3'
miRNA:   3'- ggaUGUUGa--CCGGgCCCGCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 14324 0.66 0.698909
Target:  5'- gCUGCucGCggugGGgCCGGGCgugguGGCggCGCCu -3'
miRNA:   3'- gGAUGu-UGa---CCgGGCCCG-----CCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 15295 0.68 0.570498
Target:  5'- gCCUGCuGGCUGcGCgCGGGCGuGCgCGaCCc -3'
miRNA:   3'- -GGAUG-UUGAC-CGgGCCCGC-CGaGC-GG- -5'
6351 3' -60.4 NC_001847.1 + 15398 0.7 0.484628
Target:  5'- --cGgGGCUgGGgCCGGGUuucGGCUCGCCc -3'
miRNA:   3'- ggaUgUUGA-CCgGGCCCG---CCGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 15533 0.68 0.609948
Target:  5'- gCCgcggGCuGCUGGCgCCGGuGCGcGCgcgGCCg -3'
miRNA:   3'- -GGa---UGuUGACCG-GGCC-CGC-CGag-CGG- -5'
6351 3' -60.4 NC_001847.1 + 15754 0.7 0.49389
Target:  5'- gCCUAugcCGACgcgggcGGCCCGcuuucgccGGCGGCaagCGCCg -3'
miRNA:   3'- -GGAU---GUUGa-----CCGGGC--------CCGCCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 15993 0.68 0.619867
Target:  5'- cCCcGCGGC-GGCCgCGGcGCcgacgaGCUCGCCa -3'
miRNA:   3'- -GGaUGUUGaCCGG-GCC-CGc-----CGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 16040 0.66 0.698909
Target:  5'- gCCUGCcccGCcGcCCCGcGGCGGCcgcggCGCCu -3'
miRNA:   3'- -GGAUGu--UGaCcGGGC-CCGCCGa----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 16456 0.68 0.609948
Target:  5'- aCUACGACgaGGCCCGcGGCGcagagCGCg -3'
miRNA:   3'- gGAUGUUGa-CCGGGC-CCGCcga--GCGg -5'
6351 3' -60.4 NC_001847.1 + 16580 0.72 0.372935
Target:  5'- --gACAGCggGGUCgGGGCGGCguggggUGCCg -3'
miRNA:   3'- ggaUGUUGa-CCGGgCCCGCCGa-----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.