miRNA display CGI


Results 41 - 60 of 517 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 3' -60.4 NC_001847.1 + 133409 0.74 0.306536
Target:  5'- aCCUcugcgcGCGGCUGGCCgCGGcGCGGCggCGgCu -3'
miRNA:   3'- -GGA------UGUUGACCGG-GCC-CGCCGa-GCgG- -5'
6351 3' -60.4 NC_001847.1 + 103905 0.74 0.306536
Target:  5'- gCCggGCGccGC-GGCCgCGGGCGGCgcCGCCg -3'
miRNA:   3'- -GGa-UGU--UGaCCGG-GCCCGCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 36368 0.74 0.306536
Target:  5'- --cGCGGCgccgccgcGGCCCGGGCaGCgcgCGCCg -3'
miRNA:   3'- ggaUGUUGa-------CCGGGCCCGcCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 37796 0.74 0.306536
Target:  5'- gCCUGCGGCUGuuugacacgcGgCCGGGCGGgCgcgaCGCCg -3'
miRNA:   3'- -GGAUGUUGAC----------CgGGCCCGCC-Ga---GCGG- -5'
6351 3' -60.4 NC_001847.1 + 30596 0.74 0.306536
Target:  5'- aCCUcugcgcGCGGCUGGCCgCGGcGCGGCggCGgCu -3'
miRNA:   3'- -GGA------UGUUGACCGG-GCC-CGCCGa-GCgG- -5'
6351 3' -60.4 NC_001847.1 + 80831 0.73 0.313446
Target:  5'- gCC-GCGACUGGgggggcagaUCCGGGCGGCggCGCg -3'
miRNA:   3'- -GGaUGUUGACC---------GGGCCCGCCGa-GCGg -5'
6351 3' -60.4 NC_001847.1 + 30781 0.73 0.320473
Target:  5'- gCCUcGCGGCgcgucuucGGCCCGGGCGccuucGCgcgCGCCg -3'
miRNA:   3'- -GGA-UGUUGa-------CCGGGCCCGC-----CGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 133594 0.73 0.320473
Target:  5'- gCCUcGCGGCgcgucuucGGCCCGGGCGccuucGCgcgCGCCg -3'
miRNA:   3'- -GGA-UGUUGa-------CCGGGCCCGC-----CGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 134120 0.73 0.327618
Target:  5'- gCUGCGGC-GcGCCgCGGGCGGCg-GCCu -3'
miRNA:   3'- gGAUGUUGaC-CGG-GCCCGCCGagCGG- -5'
6351 3' -60.4 NC_001847.1 + 30738 0.73 0.327618
Target:  5'- gCC-GCGcGCUGGCCCGaGCGGCgCGCUg -3'
miRNA:   3'- -GGaUGU-UGACCGGGCcCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 27063 0.73 0.327618
Target:  5'- gCCcGCAGCcc-CCCGGGCGGCaccgCGCCc -3'
miRNA:   3'- -GGaUGUUGaccGGGCCCGCCGa---GCGG- -5'
6351 3' -60.4 NC_001847.1 + 31307 0.73 0.327618
Target:  5'- gCUGCGGC-GcGCCgCGGGCGGCg-GCCu -3'
miRNA:   3'- gGAUGUUGaC-CGG-GCCCGCCGagCGG- -5'
6351 3' -60.4 NC_001847.1 + 133551 0.73 0.327618
Target:  5'- gCC-GCGcGCUGGCCCGaGCGGCgCGCUg -3'
miRNA:   3'- -GGaUGU-UGACCGGGCcCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 81159 0.73 0.33488
Target:  5'- --gACGACUGGCCCGccgcgccgcucGGagGGCUCGCg -3'
miRNA:   3'- ggaUGUUGACCGGGC-----------CCg-CCGAGCGg -5'
6351 3' -60.4 NC_001847.1 + 100585 0.73 0.33488
Target:  5'- gCgUGCAGCuuggcggccugUGGCCCcaagcgcccggcGGGCGGCgcaUCGCCg -3'
miRNA:   3'- -GgAUGUUG-----------ACCGGG------------CCCGCCG---AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 2652 0.73 0.33488
Target:  5'- gCUUGCGGCgccuucGCCC-GGCGGCUCgGCCg -3'
miRNA:   3'- -GGAUGUUGac----CGGGcCCGCCGAG-CGG- -5'
6351 3' -60.4 NC_001847.1 + 111074 0.73 0.342259
Target:  5'- gCUGCcGCgGGCCUGGGCccGGCUgCGCg -3'
miRNA:   3'- gGAUGuUGaCCGGGCCCG--CCGA-GCGg -5'
6351 3' -60.4 NC_001847.1 + 37261 0.73 0.342259
Target:  5'- uCCUggaGCAGCacGGCCgGGGCGGCgUCGaCUg -3'
miRNA:   3'- -GGA---UGUUGa-CCGGgCCCGCCG-AGC-GG- -5'
6351 3' -60.4 NC_001847.1 + 56858 0.73 0.342259
Target:  5'- gUCUGCGcccgGC-GGCCCGGGCgcggccacgGGCcCGCCg -3'
miRNA:   3'- -GGAUGU----UGaCCGGGCCCG---------CCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 11661 0.73 0.342259
Target:  5'- gCUUGCGGCggccccagccGaGCCCGcGGCGGCcgUCGCCg -3'
miRNA:   3'- -GGAUGUUGa---------C-CGGGC-CCGCCG--AGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.