miRNA display CGI


Results 21 - 40 of 517 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 3' -60.4 NC_001847.1 + 14156 0.76 0.211548
Target:  5'- --cGCAGCggcGGCCgGGGCGGCcgCGCUa -3'
miRNA:   3'- ggaUGUUGa--CCGGgCCCGCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 125016 0.76 0.211548
Target:  5'- gCUACGGCcgGGCCCGcucgccgcgaaGGCGGCUuucccCGCCg -3'
miRNA:   3'- gGAUGUUGa-CCGGGC-----------CCGCCGA-----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 102886 0.76 0.211548
Target:  5'- --cGCGGCgGGCCCGGGCccgcucugGGCUcCGCCc -3'
miRNA:   3'- ggaUGUUGaCCGGGCCCG--------CCGA-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 34586 0.76 0.221874
Target:  5'- aCCUGCGcaaGGCCCGGGCgcuggcgcGGCggcgCGCCg -3'
miRNA:   3'- -GGAUGUugaCCGGGCCCG--------CCGa---GCGG- -5'
6351 3' -60.4 NC_001847.1 + 88175 0.76 0.227196
Target:  5'- gCCUGCugcGCuUGGCCCGGGCgcggGGCUuucugcUGCCg -3'
miRNA:   3'- -GGAUGu--UG-ACCGGGCCCG----CCGA------GCGG- -5'
6351 3' -60.4 NC_001847.1 + 133904 0.76 0.227196
Target:  5'- gCUGCGGCcgguguaccUGGCCugCGGGCGGCgcgCGCUg -3'
miRNA:   3'- gGAUGUUG---------ACCGG--GCCCGCCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 31091 0.76 0.227196
Target:  5'- gCUGCGGCcgguguaccUGGCCugCGGGCGGCgcgCGCUg -3'
miRNA:   3'- gGAUGUUG---------ACCGG--GCCCGCCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 120111 0.75 0.249572
Target:  5'- --cACAGCUcGCCCGGcggccGCGGCUCGCg -3'
miRNA:   3'- ggaUGUUGAcCGGGCC-----CGCCGAGCGg -5'
6351 3' -60.4 NC_001847.1 + 87668 0.75 0.255444
Target:  5'- gCUGCGccGCaUGGCCCGGGCGcuggggcugcuGCggCGCCg -3'
miRNA:   3'- gGAUGU--UG-ACCGGGCCCGC-----------CGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 122636 0.75 0.261428
Target:  5'- gCCUucguCGuCUGGCCCGGGUucuuGGC-CGCCc -3'
miRNA:   3'- -GGAu---GUuGACCGGGCCCG----CCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 89846 0.74 0.286508
Target:  5'- gCCUGCGACcgccGGCUgcaaGGcCGGCUCGCCg -3'
miRNA:   3'- -GGAUGUUGa---CCGGg---CCcGCCGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 38205 0.74 0.286508
Target:  5'- gCCUGCcgcccGCggaGGCCCGGGCcGCgCGCCu -3'
miRNA:   3'- -GGAUGu----UGa--CCGGGCCCGcCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 2742 0.74 0.293067
Target:  5'- aCCgGCccCcGGCCCGGcGCGGCggCGCCg -3'
miRNA:   3'- -GGaUGuuGaCCGGGCC-CGCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 66330 0.74 0.293067
Target:  5'- cCCUGCGGCggguggGGCgCGGGCG-C-CGCCg -3'
miRNA:   3'- -GGAUGUUGa-----CCGgGCCCGCcGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 121165 0.74 0.293067
Target:  5'- aCCcGCcGCUugccGGCCagGGGCgGGCUCGCCa -3'
miRNA:   3'- -GGaUGuUGA----CCGGg-CCCG-CCGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 105555 0.74 0.293067
Target:  5'- aCCgGCccCcGGCCCGGcGCGGCggCGCCg -3'
miRNA:   3'- -GGaUGuuGaCCGGGCC-CGCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 23900 0.74 0.299743
Target:  5'- --aGCGGCaGGUUCGGGCGcagcaGCUCGCCg -3'
miRNA:   3'- ggaUGUUGaCCGGGCCCGC-----CGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 78291 0.74 0.299743
Target:  5'- cUCUGCGagGCgGuGCUCGGGCGGCUgggcCGCCc -3'
miRNA:   3'- -GGAUGU--UGaC-CGGGCCCGCCGA----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 119247 0.74 0.299743
Target:  5'- gCUGgGACUGauuauggcggcGCCCGcGCGGCUCGUCg -3'
miRNA:   3'- gGAUgUUGAC-----------CGGGCcCGCCGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 30596 0.74 0.306536
Target:  5'- aCCUcugcgcGCGGCUGGCCgCGGcGCGGCggCGgCu -3'
miRNA:   3'- -GGA------UGUUGACCGG-GCC-CGCCGa-GCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.