miRNA display CGI


Results 21 - 40 of 517 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 3' -60.4 NC_001847.1 + 58061 0.66 0.727898
Target:  5'- --cGCAGCUcGcGCUUcGGCGGCgagCGCCg -3'
miRNA:   3'- ggaUGUUGA-C-CGGGcCCGCCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 2169 0.66 0.727898
Target:  5'- gUCUcGCAGCgcccgcgccGCCUGGGCGGCgugcgggCGCa -3'
miRNA:   3'- -GGA-UGUUGac-------CGGGCCCGCCGa------GCGg -5'
6351 3' -60.4 NC_001847.1 + 94167 0.66 0.727898
Target:  5'- --gGCGGCUG-CUgGGcGCGGC-CGCCu -3'
miRNA:   3'- ggaUGUUGACcGGgCC-CGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 67537 0.66 0.727898
Target:  5'- gCCUuuuuCcGCaGGCgCGGGCGGUUCuCCc -3'
miRNA:   3'- -GGAu---GuUGaCCGgGCCCGCCGAGcGG- -5'
6351 3' -60.4 NC_001847.1 + 23769 0.66 0.727898
Target:  5'- aCUUGgcCAGCggauGCCCGGGCGcgaGgUCGCCc -3'
miRNA:   3'- -GGAU--GUUGac--CGGGCCCGC---CgAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 17797 0.66 0.727898
Target:  5'- --gGCuuuGCUcGGCCgCGGGgGGCgaggcCGCCc -3'
miRNA:   3'- ggaUGu--UGA-CCGG-GCCCgCCGa----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 132374 0.66 0.727898
Target:  5'- gCCgcCGGCgggGGCgCCGGcGcCGGCgcCGCCg -3'
miRNA:   3'- -GGauGUUGa--CCG-GGCC-C-GCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 112775 0.66 0.727898
Target:  5'- uUCUGCcccgagGACUGGCgccCCGaGGCGcugcgcCUCGCCa -3'
miRNA:   3'- -GGAUG------UUGACCG---GGC-CCGCc-----GAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 112108 0.66 0.727898
Target:  5'- ----gGACUGGCUCGaGCGGCgcgugGCCg -3'
miRNA:   3'- ggaugUUGACCGGGCcCGCCGag---CGG- -5'
6351 3' -60.4 NC_001847.1 + 22513 0.66 0.727898
Target:  5'- --gGCGGCggcGGgCCGGGCcGGUcUGCCg -3'
miRNA:   3'- ggaUGUUGa--CCgGGCCCG-CCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 46802 0.66 0.727898
Target:  5'- gCUACGGCagacgagcacaGGCCCGcGCGGCUaaaGCg -3'
miRNA:   3'- gGAUGUUGa----------CCGGGCcCGCCGAg--CGg -5'
6351 3' -60.4 NC_001847.1 + 78298 0.66 0.727898
Target:  5'- gCCgggcGCAGacGGCgCGGcGCGGCgcgcgCGCCg -3'
miRNA:   3'- -GGa---UGUUgaCCGgGCC-CGCCGa----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 86378 0.66 0.727898
Target:  5'- --gGCGGC-GGgCCGcGGCGGCgggCGCg -3'
miRNA:   3'- ggaUGUUGaCCgGGC-CCGCCGa--GCGg -5'
6351 3' -60.4 NC_001847.1 + 88294 0.66 0.727898
Target:  5'- -----uGCUGGgCCGacGCGGCUCGCg -3'
miRNA:   3'- ggauguUGACCgGGCc-CGCCGAGCGg -5'
6351 3' -60.4 NC_001847.1 + 97937 0.66 0.727898
Target:  5'- gCCgccaAGC-GGCaCCGGGCGcCUCGCa -3'
miRNA:   3'- -GGaug-UUGaCCG-GGCCCGCcGAGCGg -5'
6351 3' -60.4 NC_001847.1 + 128362 0.66 0.727898
Target:  5'- gCUGCuGgUGGCCaCGGaGCaGCUggCGCCu -3'
miRNA:   3'- gGAUGuUgACCGG-GCC-CGcCGA--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 29561 0.66 0.727898
Target:  5'- gCCgcCGGCgggGGCgCCGGcGcCGGCgcCGCCg -3'
miRNA:   3'- -GGauGUUGa--CCG-GGCC-C-GCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 70287 0.66 0.727898
Target:  5'- gCCUGCGAaaaguaccaGUCCugcaggGGGCGGCUCGgCa -3'
miRNA:   3'- -GGAUGUUgac------CGGG------CCCGCCGAGCgG- -5'
6351 3' -60.4 NC_001847.1 + 98871 0.66 0.727898
Target:  5'- cCCggaaggGCGcgUGcGCCUGGGCGGCccagGCCg -3'
miRNA:   3'- -GGa-----UGUugAC-CGGGCCCGCCGag--CGG- -5'
6351 3' -60.4 NC_001847.1 + 90776 0.66 0.726942
Target:  5'- gCCUGCGcgGCgaggGGCCCguucagcagccccGGGCGcGCguaaucaCGCCc -3'
miRNA:   3'- -GGAUGU--UGa---CCGGG-------------CCCGC-CGa------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.