miRNA display CGI


Results 21 - 40 of 517 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 3' -60.4 NC_001847.1 + 31145 0.86 0.043612
Target:  5'- uUCUGCGGCUGGCCuucgCGGGCGGCgucgaCGCCg -3'
miRNA:   3'- -GGAUGUUGACCGG----GCCCGCCGa----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 11661 0.73 0.342259
Target:  5'- gCUUGCGGCggccccagccGaGCCCGcGGCGGCcgUCGCCg -3'
miRNA:   3'- -GGAUGUUGa---------C-CGGGC-CCGCCG--AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 56858 0.73 0.342259
Target:  5'- gUCUGCGcccgGC-GGCCCGGGCgcggccacgGGCcCGCCg -3'
miRNA:   3'- -GGAUGU----UGaCCGGGCCCG---------CCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 103905 0.74 0.306536
Target:  5'- gCCggGCGccGC-GGCCgCGGGCGGCgcCGCCg -3'
miRNA:   3'- -GGa-UGU--UGaCCGG-GCCCGCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 87668 0.75 0.255444
Target:  5'- gCUGCGccGCaUGGCCCGGGCGcuggggcugcuGCggCGCCg -3'
miRNA:   3'- gGAUGU--UG-ACCGGGCCCGC-----------CGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 52667 0.72 0.372935
Target:  5'- gCCUucgGCGGCcccgUGGCCgGGGCcgGGCcCGCCg -3'
miRNA:   3'- -GGA---UGUUG----ACCGGgCCCG--CCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 115697 0.73 0.349755
Target:  5'- --aGCGGCUGGCCCGGcaGCGgGCgCGCg -3'
miRNA:   3'- ggaUGUUGACCGGGCC--CGC-CGaGCGg -5'
6351 3' -60.4 NC_001847.1 + 54383 0.76 0.206542
Target:  5'- gCUGCGGCgggcGGCCgCGGGCgaGGCgggCGCCg -3'
miRNA:   3'- gGAUGUUGa---CCGG-GCCCG--CCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 27063 0.73 0.327618
Target:  5'- gCCcGCAGCcc-CCCGGGCGGCaccgCGCCc -3'
miRNA:   3'- -GGaUGUUGaccGGGCCCGCCGa---GCGG- -5'
6351 3' -60.4 NC_001847.1 + 80831 0.73 0.313446
Target:  5'- gCC-GCGACUGGgggggcagaUCCGGGCGGCggCGCg -3'
miRNA:   3'- -GGaUGUUGACC---------GGGCCCGCCGa-GCGg -5'
6351 3' -60.4 NC_001847.1 + 107420 0.77 0.192134
Target:  5'- gCC-ACAGCUcGGCCagcucggcgCGGGCGGCcCGCCg -3'
miRNA:   3'- -GGaUGUUGA-CCGG---------GCCCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 33494 0.77 0.178616
Target:  5'- uCCgcgGCGGC-GGCgCGGGCGGCggcgggCGCCg -3'
miRNA:   3'- -GGa--UGUUGaCCGgGCCCGCCGa-----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 99015 0.72 0.397139
Target:  5'- aCC-ACAGCgcuGCCuCGGGCGGCgagcacCGCCc -3'
miRNA:   3'- -GGaUGUUGac-CGG-GCCCGCCGa-----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 28716 0.72 0.372935
Target:  5'- cCCUuugugcGCGGCgcGGCCgCGGGCaGCgUCGCCg -3'
miRNA:   3'- -GGA------UGUUGa-CCGG-GCCCGcCG-AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 2652 0.73 0.33488
Target:  5'- gCUUGCGGCgccuucGCCC-GGCGGCUCgGCCg -3'
miRNA:   3'- -GGAUGUUGac----CGGGcCCGCCGAG-CGG- -5'
6351 3' -60.4 NC_001847.1 + 78291 0.74 0.299743
Target:  5'- cUCUGCGagGCgGuGCUCGGGCGGCUgggcCGCCc -3'
miRNA:   3'- -GGAUGU--UGaC-CGGGCCCGCCGA----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 66330 0.74 0.293067
Target:  5'- cCCUGCGGCggguggGGCgCGGGCG-C-CGCCg -3'
miRNA:   3'- -GGAUGUUGa-----CCGgGCCCGCcGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 33963 0.78 0.170079
Target:  5'- cCCgaGCGcGCUGGCgCCGGGCGcGCUgGCCg -3'
miRNA:   3'- -GGa-UGU-UGACCG-GGCCCGC-CGAgCGG- -5'
6351 3' -60.4 NC_001847.1 + 133409 0.74 0.306536
Target:  5'- aCCUcugcgcGCGGCUGGCCgCGGcGCGGCggCGgCu -3'
miRNA:   3'- -GGA------UGUUGACCGG-GCC-CGCCGa-GCgG- -5'
6351 3' -60.4 NC_001847.1 + 133551 0.73 0.327618
Target:  5'- gCC-GCGcGCUGGCCCGaGCGGCgCGCUg -3'
miRNA:   3'- -GGaUGU-UGACCGGGCcCGCCGaGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.