Results 21 - 40 of 517 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6351 | 3' | -60.4 | NC_001847.1 | + | 80831 | 0.73 | 0.313446 |
Target: 5'- gCC-GCGACUGGgggggcagaUCCGGGCGGCggCGCg -3' miRNA: 3'- -GGaUGUUGACC---------GGGCCCGCCGa-GCGg -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 36368 | 0.74 | 0.306536 |
Target: 5'- --cGCGGCgccgccgcGGCCCGGGCaGCgcgCGCCg -3' miRNA: 3'- ggaUGUUGa-------CCGGGCCCGcCGa--GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 34586 | 0.76 | 0.221874 |
Target: 5'- aCCUGCGcaaGGCCCGGGCgcuggcgcGGCggcgCGCCg -3' miRNA: 3'- -GGAUGUugaCCGGGCCCG--------CCGa---GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 55443 | 0.78 | 0.165949 |
Target: 5'- uCCUGCAGCgccUGGCgCCGGcGgGGCgcgCGCCg -3' miRNA: 3'- -GGAUGUUG---ACCG-GGCC-CgCCGa--GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 132163 | 0.72 | 0.357367 |
Target: 5'- gCUcCAGCgcgcGGCCCcGGCGGCgcugcgCGCCg -3' miRNA: 3'- gGAuGUUGa---CCGGGcCCGCCGa-----GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 81159 | 0.73 | 0.33488 |
Target: 5'- --gACGACUGGCCCGccgcgccgcucGGagGGCUCGCg -3' miRNA: 3'- ggaUGUUGACCGGGC-----------CCg-CCGAGCGg -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 119247 | 0.74 | 0.299743 |
Target: 5'- gCUGgGACUGauuauggcggcGCCCGcGCGGCUCGUCg -3' miRNA: 3'- gGAUgUUGAC-----------CGGGCcCGCCGAGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 21362 | 0.81 | 0.108354 |
Target: 5'- gCCgucgGCGGCUcgGGCCgccuCGGGCGGCUCGUCa -3' miRNA: 3'- -GGa---UGUUGA--CCGG----GCCCGCCGAGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 134120 | 0.73 | 0.327618 |
Target: 5'- gCUGCGGC-GcGCCgCGGGCGGCg-GCCu -3' miRNA: 3'- gGAUGUUGaC-CGG-GCCCGCCGagCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 100818 | 0.83 | 0.075588 |
Target: 5'- aUUGCGGCcgaccucGGCCCGGGCGGCUCcgGCCa -3' miRNA: 3'- gGAUGUUGa------CCGGGCCCGCCGAG--CGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 37796 | 0.74 | 0.306536 |
Target: 5'- gCCUGCGGCUGuuugacacgcGgCCGGGCGGgCgcgaCGCCg -3' miRNA: 3'- -GGAUGUUGAC----------CgGGCCCGCC-Ga---GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 133594 | 0.73 | 0.320473 |
Target: 5'- gCCUcGCGGCgcgucuucGGCCCGGGCGccuucGCgcgCGCCg -3' miRNA: 3'- -GGA-UGUUGa-------CCGGGCCCGC-----CGa--GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 105555 | 0.74 | 0.293067 |
Target: 5'- aCCgGCccCcGGCCCGGcGCGGCggCGCCg -3' miRNA: 3'- -GGaUGuuGaCCGGGCC-CGCCGa-GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 133904 | 0.76 | 0.227196 |
Target: 5'- gCUGCGGCcgguguaccUGGCCugCGGGCGGCgcgCGCUg -3' miRNA: 3'- gGAUGUUG---------ACCGG--GCCCGCCGa--GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 49056 | 0.77 | 0.196836 |
Target: 5'- --cGCAGCUcacGGCCgCGGGCGGCggcaGCCg -3' miRNA: 3'- ggaUGUUGA---CCGG-GCCCGCCGag--CGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 33963 | 0.78 | 0.170079 |
Target: 5'- cCCgaGCGcGCUGGCgCCGGGCGcGCUgGCCg -3' miRNA: 3'- -GGa-UGU-UGACCG-GGCCCGC-CGAgCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 78069 | 0.72 | 0.388959 |
Target: 5'- gCCacgACGGCgcagGaGUCCGGGCGGCg-GCCg -3' miRNA: 3'- -GGa--UGUUGa---C-CGGGCCCGCCGagCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 76702 | 0.72 | 0.365094 |
Target: 5'- gCUGCGGCUGGaaauggCCGacGGCGaGCUCGUCg -3' miRNA: 3'- gGAUGUUGACCg-----GGC--CCGC-CGAGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 13114 | 0.73 | 0.342259 |
Target: 5'- --cGCGGCcggGGCgCgCGGGCGGCgccgCGCCg -3' miRNA: 3'- ggaUGUUGa--CCG-G-GCCCGCCGa---GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 2652 | 0.73 | 0.33488 |
Target: 5'- gCUUGCGGCgccuucGCCC-GGCGGCUCgGCCg -3' miRNA: 3'- -GGAUGUUGac----CGGGcCCGCCGAG-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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