miRNA display CGI


Results 21 - 40 of 517 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 3' -60.4 NC_001847.1 + 4607 0.77 0.192134
Target:  5'- gCC-ACAGCUcGGCCagcucggcgCGGGCGGCcCGCCg -3'
miRNA:   3'- -GGaUGUUGA-CCGG---------GCCCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 5069 0.7 0.47545
Target:  5'- --gACGGCgGGCCgggagCGGGCGGCagugcggCGCCu -3'
miRNA:   3'- ggaUGUUGaCCGG-----GCCCGCCGa------GCGG- -5'
6351 3' -60.4 NC_001847.1 + 5443 0.7 0.46636
Target:  5'- cCCUGCGugUuGCCCGacGGCGGUggcgGCCg -3'
miRNA:   3'- -GGAUGUugAcCGGGC--CCGCCGag--CGG- -5'
6351 3' -60.4 NC_001847.1 + 5722 0.71 0.413825
Target:  5'- gCCUGgGaggGCUuaccuGCCCgcgGGGCGGUUCGCCg -3'
miRNA:   3'- -GGAUgU---UGAc----CGGG---CCCGCCGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 5866 0.68 0.579331
Target:  5'- cCCUcgAGgUGGUCCagcgcugcgcgcaGGGCGGCcgCGCCg -3'
miRNA:   3'- -GGAugUUgACCGGG-------------CCCGCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 6683 0.66 0.698909
Target:  5'- gCCgcgGCGGCcGG-CCGGGCGcGCgCGCa -3'
miRNA:   3'- -GGa--UGUUGaCCgGGCCCGC-CGaGCGg -5'
6351 3' -60.4 NC_001847.1 + 7164 0.68 0.600046
Target:  5'- --cGCGcucGCUcGCCCGGGCGGUUCauCCg -3'
miRNA:   3'- ggaUGU---UGAcCGGGCCCGCCGAGc-GG- -5'
6351 3' -60.4 NC_001847.1 + 7234 0.69 0.51265
Target:  5'- gCUGCAGC-GGCUgguCGGGUGGCUgUGCg -3'
miRNA:   3'- gGAUGUUGaCCGG---GCCCGCCGA-GCGg -5'
6351 3' -60.4 NC_001847.1 + 7411 0.68 0.580314
Target:  5'- --gGCAGacGGCaCGcGGCGGCUUGCCa -3'
miRNA:   3'- ggaUGUUgaCCGgGC-CCGCCGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 7894 0.7 0.47545
Target:  5'- aCCUaGCcGCgcggGGCgCGcGGCGGC-CGCCg -3'
miRNA:   3'- -GGA-UGuUGa---CCGgGC-CCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 8464 0.68 0.619867
Target:  5'- --gGCGGCgccgGGCCgGgGGCGGCgcUCgGCCg -3'
miRNA:   3'- ggaUGUUGa---CCGGgC-CCGCCG--AG-CGG- -5'
6351 3' -60.4 NC_001847.1 + 9963 0.66 0.698909
Target:  5'- uUCUGCcccgagGACUGGgcCCCGaGGCGcugcgcCUCGCCa -3'
miRNA:   3'- -GGAUG------UUGACC--GGGC-CCGCc-----GAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 10024 0.68 0.590165
Target:  5'- -gUGCGAg-GGCuCCGGGCuuCUCGCCg -3'
miRNA:   3'- ggAUGUUgaCCG-GGCCCGccGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 10150 0.66 0.689129
Target:  5'- gCUGCAGCUcucGCCCGagcaGGcCGGCccgcugCGCCg -3'
miRNA:   3'- gGAUGUUGAc--CGGGC----CC-GCCGa-----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 10202 0.66 0.698909
Target:  5'- gCCgccGCcGCcgGGCCCaGGGCGcGCcCGCUg -3'
miRNA:   3'- -GGa--UGuUGa-CCGGG-CCCGC-CGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 10523 0.67 0.665492
Target:  5'- --gACGACguguucuuccccgGGCCCGGGgacccgcgccCGGCcggCGCCg -3'
miRNA:   3'- ggaUGUUGa------------CCGGGCCC----------GCCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 10622 0.71 0.419766
Target:  5'- cCCUGCuggcGCUGGUccuccggcuccucgCCGGGCucCUCGCCa -3'
miRNA:   3'- -GGAUGu---UGACCG--------------GGCCCGccGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 10688 0.67 0.639722
Target:  5'- cCCUcCggUcGcGCCCGGGCgcGGCccgCGCCg -3'
miRNA:   3'- -GGAuGuuGaC-CGGGCCCG--CCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 10836 0.67 0.679305
Target:  5'- aCCUGCGcgcgacggcggcGCgUGGCCgaGGcGCGGCgggCGCg -3'
miRNA:   3'- -GGAUGU------------UG-ACCGGg-CC-CGCCGa--GCGg -5'
6351 3' -60.4 NC_001847.1 + 11187 0.7 0.503232
Target:  5'- gCUGCcGCUGGUCCGcGcGgGGCUgGUCg -3'
miRNA:   3'- gGAUGuUGACCGGGC-C-CgCCGAgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.