miRNA display CGI


Results 1 - 20 of 517 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 3' -60.4 NC_001847.1 + 73 0.76 0.211548
Target:  5'- --cGCGGCgGGCCCGGGCccgcucugGGCUcCGCCc -3'
miRNA:   3'- ggaUGUUGaCCGGGCCCG--------CCGA-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 483 0.68 0.590165
Target:  5'- --aGCAGCggcGGCggCgGGGCGGCcgcgCGCCa -3'
miRNA:   3'- ggaUGUUGa--CCG--GgCCCGCCGa---GCGG- -5'
6351 3' -60.4 NC_001847.1 + 755 0.69 0.560722
Target:  5'- cCCUAgGGCgaggccGGCCCGccgccGGCGGCgccgGCCu -3'
miRNA:   3'- -GGAUgUUGa-----CCGGGC-----CCGCCGag--CGG- -5'
6351 3' -60.4 NC_001847.1 + 869 0.66 0.708636
Target:  5'- aCCUccacgcGCGGCggcGGCCCGcGccggggccgccGCGGC-CGCCg -3'
miRNA:   3'- -GGA------UGUUGa--CCGGGC-C-----------CGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 953 0.67 0.639722
Target:  5'- cCCggggACGACUGcgccggcaCCCGGGcCGGCggggcuucCGCCg -3'
miRNA:   3'- -GGa---UGUUGACc-------GGGCCC-GCCGa-------GCGG- -5'
6351 3' -60.4 NC_001847.1 + 1063 0.7 0.484628
Target:  5'- --aGCGGC-GGCgCCGGGCuGUUCGCUg -3'
miRNA:   3'- ggaUGUUGaCCG-GGCCCGcCGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 1092 0.74 0.306536
Target:  5'- gCCggGCGccGC-GGCCgCGGGCGGCgcCGCCg -3'
miRNA:   3'- -GGa-UGU--UGaCCGG-GCCCGCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 1277 0.68 0.580314
Target:  5'- cCCaGCggUUGGCggCGcGGUGGCUgGCCg -3'
miRNA:   3'- -GGaUGuuGACCGg-GC-CCGCCGAgCGG- -5'
6351 3' -60.4 NC_001847.1 + 1948 0.66 0.689129
Target:  5'- --gGCcGCcGGCgcucguccucgCCGGGCGGCgcCGCCa -3'
miRNA:   3'- ggaUGuUGaCCG-----------GGCCCGCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 2090 0.68 0.590165
Target:  5'- cCCcGCGg--GGCCCGcgcGGCGGCggGCCg -3'
miRNA:   3'- -GGaUGUugaCCGGGC---CCGCCGagCGG- -5'
6351 3' -60.4 NC_001847.1 + 2169 0.66 0.727898
Target:  5'- gUCUcGCAGCgcccgcgccGCCUGGGCGGCgugcgggCGCa -3'
miRNA:   3'- -GGA-UGUUGac-------CGGGCCCGCCGa------GCGg -5'
6351 3' -60.4 NC_001847.1 + 2250 0.71 0.405427
Target:  5'- --gGCGugUGGuagucCCCGGGCGGCaCGCg -3'
miRNA:   3'- ggaUGUugACC-----GGGCCCGCCGaGCGg -5'
6351 3' -60.4 NC_001847.1 + 2288 0.7 0.49389
Target:  5'- gCCgucgGCGGCggGGCcgCCGGGCGGCauggGCCc -3'
miRNA:   3'- -GGa---UGUUGa-CCG--GGCCCGCCGag--CGG- -5'
6351 3' -60.4 NC_001847.1 + 2343 0.68 0.597079
Target:  5'- --gGCGGCUcccgccgcgccGGCCCGgccgcgucggcggcGGCGGCuuuUCGCCg -3'
miRNA:   3'- ggaUGUUGA-----------CCGGGC--------------CCGCCG---AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 2652 0.73 0.33488
Target:  5'- gCUUGCGGCgccuucGCCC-GGCGGCUCgGCCg -3'
miRNA:   3'- -GGAUGUUGac----CGGGcCCGCCGAG-CGG- -5'
6351 3' -60.4 NC_001847.1 + 2742 0.74 0.293067
Target:  5'- aCCgGCccCcGGCCCGGcGCGGCggCGCCg -3'
miRNA:   3'- -GGaUGuuGaCCGGGCC-CGCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 2783 0.66 0.689129
Target:  5'- cCCgccgGCGGCcuccagGGCCgCGaGcGCGGC-CGCCa -3'
miRNA:   3'- -GGa---UGUUGa-----CCGG-GC-C-CGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 3860 0.68 0.604005
Target:  5'- --aGCAGCgGGCCCuccagcGGCGGCggcccgucgcgcggCGCCg -3'
miRNA:   3'- ggaUGUUGaCCGGGc-----CCGCCGa-------------GCGG- -5'
6351 3' -60.4 NC_001847.1 + 3930 0.72 0.357367
Target:  5'- --cACAgcGCUGGCagCGGGCGGCgagCGCg -3'
miRNA:   3'- ggaUGU--UGACCGg-GCCCGCCGa--GCGg -5'
6351 3' -60.4 NC_001847.1 + 3933 0.68 0.590165
Target:  5'- gCCcGC-GCUGGCgCCGcGGCGGggggggCGCCg -3'
miRNA:   3'- -GGaUGuUGACCG-GGC-CCGCCga----GCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.