Results 1 - 20 of 517 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6351 | 3' | -60.4 | NC_001847.1 | + | 73 | 0.76 | 0.211548 |
Target: 5'- --cGCGGCgGGCCCGGGCccgcucugGGCUcCGCCc -3' miRNA: 3'- ggaUGUUGaCCGGGCCCG--------CCGA-GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 483 | 0.68 | 0.590165 |
Target: 5'- --aGCAGCggcGGCggCgGGGCGGCcgcgCGCCa -3' miRNA: 3'- ggaUGUUGa--CCG--GgCCCGCCGa---GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 755 | 0.69 | 0.560722 |
Target: 5'- cCCUAgGGCgaggccGGCCCGccgccGGCGGCgccgGCCu -3' miRNA: 3'- -GGAUgUUGa-----CCGGGC-----CCGCCGag--CGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 869 | 0.66 | 0.708636 |
Target: 5'- aCCUccacgcGCGGCggcGGCCCGcGccggggccgccGCGGC-CGCCg -3' miRNA: 3'- -GGA------UGUUGa--CCGGGC-C-----------CGCCGaGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 953 | 0.67 | 0.639722 |
Target: 5'- cCCggggACGACUGcgccggcaCCCGGGcCGGCggggcuucCGCCg -3' miRNA: 3'- -GGa---UGUUGACc-------GGGCCC-GCCGa-------GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 1063 | 0.7 | 0.484628 |
Target: 5'- --aGCGGC-GGCgCCGGGCuGUUCGCUg -3' miRNA: 3'- ggaUGUUGaCCG-GGCCCGcCGAGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 1092 | 0.74 | 0.306536 |
Target: 5'- gCCggGCGccGC-GGCCgCGGGCGGCgcCGCCg -3' miRNA: 3'- -GGa-UGU--UGaCCGG-GCCCGCCGa-GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 1277 | 0.68 | 0.580314 |
Target: 5'- cCCaGCggUUGGCggCGcGGUGGCUgGCCg -3' miRNA: 3'- -GGaUGuuGACCGg-GC-CCGCCGAgCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 1948 | 0.66 | 0.689129 |
Target: 5'- --gGCcGCcGGCgcucguccucgCCGGGCGGCgcCGCCa -3' miRNA: 3'- ggaUGuUGaCCG-----------GGCCCGCCGa-GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 2090 | 0.68 | 0.590165 |
Target: 5'- cCCcGCGg--GGCCCGcgcGGCGGCggGCCg -3' miRNA: 3'- -GGaUGUugaCCGGGC---CCGCCGagCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 2169 | 0.66 | 0.727898 |
Target: 5'- gUCUcGCAGCgcccgcgccGCCUGGGCGGCgugcgggCGCa -3' miRNA: 3'- -GGA-UGUUGac-------CGGGCCCGCCGa------GCGg -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 2250 | 0.71 | 0.405427 |
Target: 5'- --gGCGugUGGuagucCCCGGGCGGCaCGCg -3' miRNA: 3'- ggaUGUugACC-----GGGCCCGCCGaGCGg -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 2288 | 0.7 | 0.49389 |
Target: 5'- gCCgucgGCGGCggGGCcgCCGGGCGGCauggGCCc -3' miRNA: 3'- -GGa---UGUUGa-CCG--GGCCCGCCGag--CGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 2343 | 0.68 | 0.597079 |
Target: 5'- --gGCGGCUcccgccgcgccGGCCCGgccgcgucggcggcGGCGGCuuuUCGCCg -3' miRNA: 3'- ggaUGUUGA-----------CCGGGC--------------CCGCCG---AGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 2652 | 0.73 | 0.33488 |
Target: 5'- gCUUGCGGCgccuucGCCC-GGCGGCUCgGCCg -3' miRNA: 3'- -GGAUGUUGac----CGGGcCCGCCGAG-CGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 2742 | 0.74 | 0.293067 |
Target: 5'- aCCgGCccCcGGCCCGGcGCGGCggCGCCg -3' miRNA: 3'- -GGaUGuuGaCCGGGCC-CGCCGa-GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 2783 | 0.66 | 0.689129 |
Target: 5'- cCCgccgGCGGCcuccagGGCCgCGaGcGCGGC-CGCCa -3' miRNA: 3'- -GGa---UGUUGa-----CCGG-GC-C-CGCCGaGCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 3860 | 0.68 | 0.604005 |
Target: 5'- --aGCAGCgGGCCCuccagcGGCGGCggcccgucgcgcggCGCCg -3' miRNA: 3'- ggaUGUUGaCCGGGc-----CCGCCGa-------------GCGG- -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 3930 | 0.72 | 0.357367 |
Target: 5'- --cACAgcGCUGGCagCGGGCGGCgagCGCg -3' miRNA: 3'- ggaUGU--UGACCGg-GCCCGCCGa--GCGg -5' |
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6351 | 3' | -60.4 | NC_001847.1 | + | 3933 | 0.68 | 0.590165 |
Target: 5'- gCCcGC-GCUGGCgCCGcGGCGGggggggCGCCg -3' miRNA: 3'- -GGaUGuUGACCG-GGC-CCGCCga----GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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