miRNA display CGI


Results 1 - 20 of 517 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 3' -60.4 NC_001847.1 + 105599 0.66 0.689129
Target:  5'- gCCgGCGGCcuccagGGCCgCGaGcGCGGC-CGCCa -3'
miRNA:   3'- -GGaUGUUGa-----CCGG-GC-C-CGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 86378 0.66 0.727898
Target:  5'- --gGCGGC-GGgCCGcGGCGGCgggCGCg -3'
miRNA:   3'- ggaUGUUGaCCgGGC-CCGCCGa--GCGg -5'
6351 3' -60.4 NC_001847.1 + 78298 0.66 0.727898
Target:  5'- gCCgggcGCAGacGGCgCGGcGCGGCgcgcgCGCCg -3'
miRNA:   3'- -GGa---UGUUgaCCGgGCC-CGCCGa----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 46802 0.66 0.727898
Target:  5'- gCUACGGCagacgagcacaGGCCCGcGCGGCUaaaGCg -3'
miRNA:   3'- gGAUGUUGa----------CCGGGCcCGCCGAg--CGg -5'
6351 3' -60.4 NC_001847.1 + 22513 0.66 0.727898
Target:  5'- --gGCGGCggcGGgCCGGGCcGGUcUGCCg -3'
miRNA:   3'- ggaUGUUGa--CCgGGCCCG-CCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 112108 0.66 0.727898
Target:  5'- ----gGACUGGCUCGaGCGGCgcgugGCCg -3'
miRNA:   3'- ggaugUUGACCGGGCcCGCCGag---CGG- -5'
6351 3' -60.4 NC_001847.1 + 121033 0.66 0.718302
Target:  5'- cCCgugACGA--GGUgCGGGUGGUcCGCCa -3'
miRNA:   3'- -GGa--UGUUgaCCGgGCCCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 52396 0.66 0.718302
Target:  5'- uCCgGCAagcGCUccaGCgCGGGCGGCgcgCGCUg -3'
miRNA:   3'- -GGaUGU---UGAc--CGgGCCCGCCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 132540 0.66 0.718302
Target:  5'- aCCUccggcGCGGCgGGCUCGcGuGCGGC-CGCg -3'
miRNA:   3'- -GGA-----UGUUGaCCGGGC-C-CGCCGaGCGg -5'
6351 3' -60.4 NC_001847.1 + 88294 0.66 0.727898
Target:  5'- -----uGCUGGgCCGacGCGGCUCGCg -3'
miRNA:   3'- ggauguUGACCgGGCc-CGCCGAGCGg -5'
6351 3' -60.4 NC_001847.1 + 97937 0.66 0.727898
Target:  5'- gCCgccaAGC-GGCaCCGGGCGcCUCGCa -3'
miRNA:   3'- -GGaug-UUGaCCG-GGCCCGCcGAGCGg -5'
6351 3' -60.4 NC_001847.1 + 128362 0.66 0.727898
Target:  5'- gCUGCuGgUGGCCaCGGaGCaGCUggCGCCu -3'
miRNA:   3'- gGAUGuUgACCGG-GCC-CGcCGA--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 131454 0.66 0.737417
Target:  5'- gCCUACcugugguGCgcgcaGGCUCGcGGCGGCcUGCUg -3'
miRNA:   3'- -GGAUGu------UGa----CCGGGC-CCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 115883 0.66 0.737417
Target:  5'- gCUGCGccGCcGGCUCGcgccgcuuGGcCGGCUCGCg -3'
miRNA:   3'- gGAUGU--UGaCCGGGC--------CC-GCCGAGCGg -5'
6351 3' -60.4 NC_001847.1 + 34495 0.66 0.737417
Target:  5'- gCCgcaGCAGCgcGGCCCuGGCgccgcagccaGGCggUCGCCa -3'
miRNA:   3'- -GGa--UGUUGa-CCGGGcCCG----------CCG--AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 22084 0.66 0.737417
Target:  5'- uCCgaaaAGCgGGCCC-GGCaGGCgCGCCg -3'
miRNA:   3'- -GGaug-UUGaCCGGGcCCG-CCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 117326 0.66 0.737417
Target:  5'- aCCUaGCGGCgGG---GGGCGGCcUCGCCc -3'
miRNA:   3'- -GGA-UGUUGaCCgggCCCGCCG-AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 98871 0.66 0.727898
Target:  5'- cCCggaaggGCGcgUGcGCCUGGGCGGCccagGCCg -3'
miRNA:   3'- -GGa-----UGUugAC-CGGGCCCGCCGag--CGG- -5'
6351 3' -60.4 NC_001847.1 + 70287 0.66 0.727898
Target:  5'- gCCUGCGAaaaguaccaGUCCugcaggGGGCGGCUCGgCa -3'
miRNA:   3'- -GGAUGUUgac------CGGG------CCCGCCGAGCgG- -5'
6351 3' -60.4 NC_001847.1 + 29561 0.66 0.727898
Target:  5'- gCCgcCGGCgggGGCgCCGGcGcCGGCgcCGCCg -3'
miRNA:   3'- -GGauGUUGa--CCG-GGCC-C-GCCGa-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.